Riemerella columbina: NYR17_03400
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Entry
NYR17_03400 CDS
T09247
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
rcl
Riemerella columbina
Pathway
rcl00220
Arginine biosynthesis
rcl00240
Pyrimidine metabolism
rcl00250
Alanine, aspartate and glutamate metabolism
rcl01100
Metabolic pathways
rcl01110
Biosynthesis of secondary metabolites
rcl01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
NYR17_03400 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
NYR17_03400 (carB)
00220 Arginine biosynthesis
NYR17_03400 (carB)
Enzymes [BR:
rcl01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
NYR17_03400 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D3
MGS
Dala_Dala_lig_C
ATP-grasp_3
ATP-grasp
ATPgrasp_Ter
GARS_A
ATP-grasp_5
Motif
Other DBs
NCBI-ProteinID:
WKS95799
LinkDB
All DBs
Position
complement(710859..714038)
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AA seq
1059 aa
AA seq
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MKRTDIKTILVIGSGPIIIGQAAEFDYSGTQACLSLKEEGYRVILINSNPATIMTDVEIA
DKVYIEPISLPFVSQIIRKERPDALLPTLGGQTGLNMAVELQKSGILEEYGVEVLGTKLS
AINQAEDRDLFRALMNDLGEPVPESDIVNTVEGALEFAERIGYPVIVRPAFTMGGTGGGI
AATETELKEIAELGLKYSPVTQCLIEKSIAGYKEIEYEVMRDANDNAIVVCNMENIDPVG
VHTGDSIVVAPSQTLSDREYQLLRNASLKIIRALGIEGGCNVQLALDPHSFNYYIIEVNP
RVSRSSALASKATGYPIAKIAAKIAVGLTLDEIMNPVTGKTYACFEPALDYVVTKIPRFP
FDKFETADRRLSTQMKATGEVMAIGRNFEESLQKAIRSLETGIRHLGLKTKQAQALTNEE
IERRIKICDDERLFIIGEALRRGYDWQQIVEWSKIDPFFIWKLKKLVDYENTITENPFNP
EILREAKRLGFSDINIAHLWSCSQREVFQFRKDNGIMPVYKMVDTCAAEFESETPYFYGT
YEEENESIVSDKEKIIVLGSGPIRIGQGVEFDYATVHSVWAIKEMGYEAIIINNNPETVS
TDFSISDKLYFDPLTEEDVMNIITLEQPKGVIVQFGGQTAINLADKLAAHGVQILGTSLE
DLDRAENRDKFEKALQELGIPQPVGKTSISKEEAISIANGIGYPVLVRPSYVLGGRAMEI
VYNEKELAHYMENAVEASPEHPVLIDKYMVGKEVEVDAISDGETVVIPGIMEHIERAGIH
SGDSIAVYPPQNINEKCLHDLVEYTQRLAKGLNVIGLMNIQYVLFENEVYVIEVNPRSSR
TVPFLSKITDVPMANLATKAILGQKLKDLGYTSGLVPEKEGVFVKVPVFSFSKLTKVDIS
LGPEMKSTGEVMGKDSTLEKALYKGMIAAGRKVPTHGSILFTVADKHKDEAAVFAKRFHE
VGFRIWATEGTAKHFEQHGIPCKVGYKIGEEEVNLIDLIQKGKVQYVVNTMTKGKQSERD
GFQIRRMSVENGVPCLTSMDTVEAILKVIESMSFQMQAM
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaacagatatcaaaaccattttagtcatcggcagcggacccatcatcattggg
caagccgcagagtttgattactccggaacacaggcctgcctctccctgaaagaagaaggc
taccgcgtgatcctcatcaactctaaccccgcaaccattatgacggatgtagaaattgcc
gataaggtttatatagaacccatatcgttaccgtttgtgagccaaatcattcgcaaagaa
agacccgacgccctcctccctacactgggcggacagacagggctcaatatggcggtagaa
ctgcagaaatctggcatcttagaagaatacggcgtggaggttttaggcaccaagctctct
gccattaaccaagcggaagaccgtgacctcttccgtgccttgatgaacgacttgggggag
cctgttccagagtcggacattgtgaataccgtagaaggcgctttagaatttgccgaacgc
attggctatccggttatcgttcgccctgcctttaccatgggtggcactggcggcggtatt
gcagccaccgaaaccgagctgaaagaaatcgccgagttaggattgaagtattccccagta
acgcaatgcctcatcgagaaatctattgcgggttataaggagatagaatacgaggtgatg
agagatgccaatgacaacgccatagtggtctgcaatatggaaaacatagaccccgtaggt
gtgcacactggagactctattgtagtggcgccttcccaaacgctgtccgatagagagtac
caactcctgagaaatgcctctctaaaaatcatcagagccttaggtatagagggcggttgt
aatgtccagctggcattagacccacattcttttaattattatatcattgaagttaatcca
cgcgtgtcccgctcttccgccttagcgagtaaagccacgggctaccctatcgccaagatt
gcagccaaaatcgctgtaggtttaaccttagatgaaattatgaaccctgtaactggcaaa
acttacgcttgctttgagcctgcgctggactatgtagtgaccaaaatccctcgctttccg
tttgataagtttgaaaccgccgaccgcagactctccacccagatgaaagctacaggcgaa
gtgatggcgatagggcgcaactttgaggaatccctacaaaaagccatccgttctttagag
acgggcatccgccacttagggttaaagaccaaacaagcccaagccctcaccaatgaggag
atagaacgccgcattaaaatctgtgatgatgagcgcctgttcatcatcggcgaagcatta
cgccgtggctacgactggcaacagattgtggagtggagtaagatagaccccttcttcatc
tggaagcttaaaaaactggtggactacgagaacaccatcaccgagaacccttttaaccca
gaaatcttaagggaagctaagcgtttgggcttttccgacatcaacatcgctcatctttgg
agctgtagccagcgcgaagtctttcagttcagaaaagataatggcataatgcctgtgtac
aagatggtggacacctgcgccgcagagttcgagagcgaaaccccgtacttttacggcacc
tatgaggaagaaaatgaaagcatcgtctccgataaagagaagattattgtgctgggctct
gggcctatccgcattggtcaaggcgtagagtttgactatgctacggttcattccgtttgg
gctattaaagaaatgggctacgaagcgatcatcatcaataacaaccccgaaacagtttcc
accgacttttccatttcggataagctctactttgaccccctcacggaggaagatgtgatg
aacatcattaccttagaacagcccaagggggttatcgttcagtttggagggcagaccgcc
atcaatttagcggataaattagccgcccacggtgtgcagattttaggcacctcgctggaa
gacttagaccgcgccgaaaaccgagataaatttgaaaaagcccttcaagaattgggcatc
ccgcagcctgtcggcaagacttccatttccaaagaagaagccatcagcatagcgaacggc
atcggctaccctgtgttggtacgccccagctatgtgcttggcggtagagcgatggagatt
gtctataacgagaaagaactcgcccattatatggagaatgccgtggaagccagccctgag
catcctgtcctcatcgataaatatatggtgggcaaagaggtggaagtagatgccatctcc
gatggagaaacggtggttatccctgggattatggaacacatagagcgcgcaggcatccac
tcgggagattccatcgccgtctatccaccacagaacatcaacgagaaatgcctccacgat
ttggtggaatatacccagcgcctcgccaaaggactgaatgtaatcggactgatgaacatt
caatatgtgctctttgagaacgaagtttatgtgatagaggttaatcctcgttcctccaga
acggtacctttcttgtctaaaatcaccgatgttcctatggcaaacctcgccaccaaagcg
atattaggacagaagctgaaagacttaggctataccagtggcttggttcctgagaaagag
ggggtctttgtcaaagtgcctgttttctccttttctaaactgaccaaggtggatatttcc
ctcggaccagagatgaaatctaccggcgaggtgatgggcaaagattctaccttagaaaaa
gccctctacaagggtatgattgccgctggacgcaaggttccgacccacggctctatcctc
ttcaccgttgccgacaagcacaaagatgaagctgccgttttcgctaagcgtttccacgag
gtgggctttagaatctgggcaacagaaggcactgccaagcactttgagcaacacggcatc
ccgtgcaaggtggggtataaaatcggtgaggaagaggtgaacctcatcgacctgattcaa
aaagggaaagtgcaatatgtggtcaataccatgacgaaaggtaagcaatcggaacgcgat
ggcttccaaatccgccgtatgtccgtagaaaatggcgtgccatgcctcacctccatggac
accgtagaagccattttaaaagtgatagaaagtatgagtttccaaatgcaagctatgtaa
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