Riemerella columbina: NYR17_04995
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Entry
NYR17_04995 CDS
T09247
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rcl
Riemerella columbina
Pathway
rcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYR17_04995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcl03019
]
NYR17_04995
03009 Ribosome biogenesis [BR:
rcl03009
]
NYR17_04995
Enzymes [BR:
rcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NYR17_04995
Messenger RNA biogenesis [BR:
rcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NYR17_04995
Ribosome biogenesis [BR:
rcl03009
]
Prokaryotic type
rRNA helicases
NYR17_04995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
LNS2_PITM1-3
Motif
Other DBs
NCBI-ProteinID:
WKS94309
LinkDB
All DBs
Position
1038589..1040253
Genome browser
AA seq
554 aa
AA seq
DB search
MNLFSESNLSPDILKAIGEMGYESPTEIQKQAIPFILSDHRDLIALAQTGTGKTAAFSLP
ILDMIDAQSRKIQLLVLCPTRELCLQIAKDIRTYSKYQKGIKSVAVYGGSSITDQIRSLR
EKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILSETPDTKQT
FLFSATMNKEVEKISKNYLTQPHRISVGSINAVKKNISHEYYVVNYRQKKEALKRLIDAN
PNQYSIIFCRTRMEAKDVADYLMQHGFAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKLKQIKSQ
TKIDLKEKPIPKGEDIIKAQVAGVFEHLFTEHENYFDFDDSLIPDLSAFSKEELVHQLLQ
FQLRDLALYYKERNDLSDQKLKREDEVRESRRERRGSEKGRRERSAGGRKRNTQGNMVRF
FFNLGKKDQLKKVDVLDIINKATKKSKKKPDIGDIEILEKFSFFEVEKPFKNEILSNLSS
MKFRGKEMRAEVAN
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttagcgagtccaatttaagtcctgacattctcaaggccattggcgaaatg
ggctacgaaagccccacagaaatccaaaaacaagctattccttttattttatcagatcat
agagacctcattgcgctggctcagacaggaacggggaaaaccgcagcgttttcattgcct
attttggatatgatagacgcgcaaagtcgtaaaatacagcttctggtgctgtgtccaacc
agagaactatgtttgcaaattgccaaagacatccgcacttattccaagtatcaaaaggga
ataaaatctgtggcagtgtatggcggtagtagcattacagaccaaatccgcagtttaaga
gagaagccacaaattattgtgggaacacctgggcgggttatcgatttaatcaaccgtaag
gcgcttgatttctccgaaatccaatggttggtgttagatgaggcagatgagatgctctct
atgggctttaaagacgatttagaaacgatactttctgaaacgccagataccaaacaaact
ttccttttctctgcaacgatgaataaggaggtggagaaaatctctaaaaactacttgaca
cagccgcatcgtatttcggtgggttccattaatgcggttaagaaaaacatctcccacgag
tattatgtagtgaattacagacagaaaaaagaagccttaaagcgtttaatagacgccaac
ccgaaccaatattccatcatcttttgtagaacccgaatggaagctaaagatgtagctgat
tatttgatgcagcacggctttgcagcagatgccctccacggcgatttgtcccaagcccaa
agggataccgtgatgaagaagtttaggcttaaaaatattgatattttggtggctacagat
gtggcagccagaggtttagatgtagattctctcacgcatgtgatccattattccttgcct
gatgacccagaagtttttgtccacagaagcggaagaacagggcgtgcgggcaaagatggg
atttctatggcgctcattaaacctgaggaaaccagaaagctaaaacagattaaaagccag
accaaaatagaccttaaagaaaagccaattcctaagggcgaagatattataaaagcccaa
gtggcaggcgtttttgagcatctatttaccgagcacgaaaactattttgactttgatgat
agccttattccagacctttcggcgttttctaaggaagagctggtgcatcagttattgcag
tttcagttgagagatttggcgctgtattacaaggaaagaaacgacctttctgaccaaaaa
ctaaagcgtgaagatgaggtaagagaaagccgcagagagcgcagaggctccgaaaagggg
agaagagagcgcagcgctggtggcagaaagagaaatacacaaggtaatatggtgcgtttt
ttctttaatctcggcaaaaaagatcaattgaaaaaggtagatgttttggacatcattaat
aaagcgactaagaaatcaaagaaaaagccagacattggcgatatagaaattttagagaaa
ttctcgttctttgaagttgaaaagccttttaaaaacgaaattctaagcaacctttcctca
atgaaatttagaggcaaagagatgagagccgaggtggcaaactaa
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