Riemerella columbina: NYR17_05305 Help Entry NYR17_05305       CDS       T09247                                  Name (GenBank) CRISPR-associated protein Csn1   KO K09952   CRISPR-associated endonuclease Csn1 [EC:3.1.-.-] Organism rcl  Riemerella columbina Brite KEGG Orthology (KO) [BR:rcl00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    02048 Prokaryotic defense system [BR:rcl02048]     NYR17_05305 Prokaryotic defense system [BR:rcl02048]  CRISPR-Cas system   Type II CRISPR-Cas system    Type II signiture cas proteins     NYR17_05305 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RuvC_III HNH_4 Cas9-BH Cas9_a Motif Other DBs NCBI-ProteinID:  WKS94366 LinkDB All DBs Position complement(1108732..1113363) Genome browser AA seq 1543 aa AA seqDB search MKRILGLDLGTNSIGWALIEQDFENKKGRIIDLGVRIIPMSQDILGKFSQGQSLSQTAQR TNDRGRRRLYERHILRRERLHRVLNILKFLPQHYAQQIDFEQRKGKFFTEIKLNYKPQPD GTHSFLFEASYQEMLSYFQERGYSDAIPKDWTLYYLRKKALNTKISREELAWIILNFNKK RGYYELRDSEENQDDTNQNSKTEEFYALKVVSVEKSEDKENFYDIHLDNGFVYAQKSNRP LYDWVGMTKEFIVTTKIQNDGMPKTDNEANVERSFRMVDSKQDWIAIKKKTEQEMQQSHQ HLGAYIFDKLLENPTQKIKGKLIQTIERKFYKQELNAILEKQKEFHPELNDRDLYLACVE ELYPLNEAHKQNLIERDFTHLFVEDIIFYQRPLKSKKSTIATCDYERRGYYVKGEKHIEA LKGIPKSHPLFQEFRLWQFLQNLKIYKKEGTDQDGKIEFNQDVTHLLLPDEEAYTQLFDF LKEQKEIEQKRLLRYFNSPISEYTWNYSEDKKYPLCPTRHMLISKLKQVTGVTPQQFLTK EIEQHLWHIIYSVKDAKEYQKALISFAQKHHINEESFVENFKKIPSFPNEYGAYSEKAIK KLLPLMRMGKYWNENDITPETKENIKLSMERLTSINYDKDRIPEVSDDYFSQAMLKCILT LHGKNPLKGLNTYQACYAVYRRHSEPSEISHWKHPDDIAYYLKHTFKQHQLKNPIVEQVV TETFRVVHDIWKHYGNGAPNFFSEIHLELGRDIKNTNEQKNKINKKYTENANRNQLIISL LEELSNDDQMERKPRPSSISHQELLKVYEEGVFYSQSTVDKEIESIRKTSTPTKNQIIKY KLWLEQGYISPYTLKPIPLSKLFTDEYEIEHIIPQSRYFDNSLNNKVICESVVNRIKDNT IATQFINSKGGDLIDLGKNNKVRLATFEAYEAHCMAYFRKNPAKLKNLLAEEVPSGFIKR QLNDSRYISKFIKGILSNIVREEGEKEATAKRLVPVFGAITARLRKDWGLQNKWNAIVQP RFERLNELNNNNLFGAWDPVLNRFILKVPQKDAKDFSVKRIDHRHHALDALIIACTTKGH IEYITHLETARKSPLVSRFRKMETQIKKDPISNETKKISVAKEFLKPWDKFTTDAYEKLR KIIISFKQNNRIINRTNNYYQKWERQASGEYKKTWKRQGAEEGKEKKNFAVRKSMHKEST FGQIKIKRIKKGQVSLNTALQDWTMIVDDTLRKSIGKIVKKHNGNIPAVKNELKNHPITQ QTKFTIYEEVDVYASRKKLDDSFTQKQLNSVTDSGIQTILQNHVNQYLNDKGELDFATAF SPEGIKAMNDSIQTLNINKKNKSRPHQPIYSVRIYEESDKKFSIGETFNKDKKYAEADKG TNLFYAIYWNDESNRRTYETVPLYEVIEHQKQCSELPLNQKLPLQTNPEKGQFLFSLSPN DLVYIPTKEEREMPQSVDFQNLTKEQHDRIYRFVSCTENTAYFVPMPNAKEIIKNENGTN NKSERVQLQHLDELDSNGKPLMIKDVCWKIEVNRVGNITKVNR NT seq 4632 nt NT seq  +upstreamnt  +downstreamnt atgaaaagaattttaggattagatttgggcactaatagcattggctgggcgttgattgaa caagattttgagaataaaaaagggagaattatagatttaggggtacgcatcatcccaatg tcacaagatatcctcgggaagtttagtcaaggccaatctctttctcaaacagcacaaaga actaatgacagaggcagaagaaggctatatgaaagacatatactccgcagagagcgacta catagagtgctaaatatcctaaaattcttaccccaacattatgctcaacaaattgatttt gaacaaagaaaaggaaaattctttaccgaaataaaactcaactacaaaccccagcctgat ggcactcattcttttctttttgaagcatcttaccaagaaatgctctcatactttcaagaa cggggctatagcgatgccattccaaaggattggactctatactaccttagaaagaaagct ttaaatacaaaaattagccgtgaagaattggcttggattattcttaatttcaataaaaaa agaggctattatgaactacgagattccgaagaaaatcaagatgatacaaaccaaaattcc aaaacagaagagttttatgccctaaaagtggtttctgtagaaaaatcggaagataaagag aatttttatgatattcatctggataatggctttgtttatgcccagaaaagcaatcgccct ttatatgattgggtgggaatgaccaaagaatttattgtaacgacaaaaattcaaaatgac ggaatgcctaaaaccgacaatgaagccaatgtggaaagaagtttccgtatggtagattca aaacaagattggattgcgataaaaaagaaaacggaacaagagatgcaacagtcgcaccaa cacttgggggcttatatttttgataaattactcgaaaatcctacccagaaaatcaaggga aaactaatccaaacgatagagcgaaaattctataagcaagagctaaatgccattttagaa aagcaaaaagaatttcatcccgagctgaacgacagagacctatatctcgcttgtgttgaa gaattatatcctcttaatgaagctcataaacaaaaccttattgagagagatttcactcat cttttcgtagaagacatcattttttatcagcggccattaaaaagtaaaaaatcaaccatt gcaacctgcgactacgaacgaagaggctattatgtaaaaggtgaaaaacatattgaagca ctaaaaggtatcccaaaatcgcatccattattccaagagtttagactttggcaattctta caaaacctaaaaatatacaaaaaagaagggactgaccaagatggaaaaatagaatttaac caagatgtcactcacctattactccctgatgaagaggcatatacccaattatttgatttt ctaaaagaacaaaaagaaatagaacaaaaaagattattaaggtattttaattcccctatt tctgaatacacttggaattattccgaagacaaaaaatatcctctctgccctactcggcat atgttgatttctaaactaaaacaagttactggtgttacgcctcaacaattcctcaccaaa gaaatagaacagcacctatggcacattatctactctgtaaaagacgctaaagaataccaa aaagccttaatttctttcgctcaaaaacatcatattaacgaagagagttttgtagaaaat ttcaaaaaaatcccttcctttcctaatgaatatggggcttattcagaaaaagcaatcaaa aaacttctccctttgatgcgtatgggtaaatattggaatgaaaatgatattactcctgaa acgaaagaaaacatcaagctgagcatggagcgcttaacttctatcaattatgataaggat aggattcctgaagtatctgatgattattttagccaagctatgcttaaatgtatcttaact ctacatgggaaaaatccgctaaaagggcttaacacctatcaagcttgttacgctgtgtat agaaggcattctgagccttcggaaatttcccattggaaacaccccgatgatattgcttac tatttaaaacatacttttaaacaacatcaattaaaaaatcctatcgtggagcaggtcgtt acagaaacctttcgggtagtacacgatatttggaaacattacggcaatggtgcccccaat ttcttttccgaaattcatttagaattgggtagagatattaaaaataccaacgagcaaaaa aacaaaatcaataaaaaatatacagaaaatgccaatcgtaatcaattgattatttcactt ttagaggaattatctaatgatgaccaaatggaacgcaaacccagaccgtcgtccattagc caccaagaattactaaaagtgtatgaagaaggcgtattttatagtcaatctaccgtagat aaagagatagaaagtattagaaaaacctctactcctaccaaaaaccagattattaaatat aaattatggctggaacaaggctatatttctccttatacactaaagcccataccgctgtct aaactatttactgatgagtatgaaatagaacacattatcccccaatctcgttattttgat aattcattaaacaataaagtcatttgtgaaagtgttgtcaatagaatcaaagataatact atcgcaactcaattcatcaatagtaaaggcggcgatctgatcgatttaggcaaaaataat aaagtgcgtttggcaacatttgaagcatacgaagcccactgtatggcgtattttagaaaa aatccagccaaattaaaaaatttattagcggaggaagtcccttctggttttataaaacga cagctcaacgatagccgctacattagcaagtttattaaaggaattttgagcaacatcgta cgagaagaaggcgaaaaagaagccacagcaaaacgattggtgcctgtatttggtgccatt acagcaagacttcgtaaagattggggattacaaaataaatggaatgccattgtacagcca aggtttgaacgccttaatgaactcaataataataacctctttggagcttgggatcccgtg ctcaatcgttttatcttaaaagtgccccaaaaggatgctaaagattttagtgtaaagcgt atagaccaccgccaccacgccttagatgcactcatcattgcttgtaccaccaaaggacat atagaatacattacacacctcgaaacagcaagaaaaagtccgctcgtttctcgcttcaga aaaatggaaactcagataaaaaaagatcctatttctaatgagacaaaaaaaatatcagtc gccaaagaatttctaaaaccttgggacaaatttactaccgatgcctatgaaaaactgcga aaaatcatcatcagtttcaaacaaaacaatcgtatcatcaataggaccaacaactattat caaaaatgggagcgacaagcttctggagaatacaaaaaaacatggaaacgccaaggtgca gaagaaggaaaagaaaagaagaactttgcagtaagaaaatcaatgcacaaagaaagcact tttggtcaaataaaaataaaacgcataaaaaaaggacaggtaagcctcaatacagcacta caagattggacaatgatcgtagatgatacattgagaaaatcaataggcaaaatcgtaaaa aaacacaatggaaatatccccgccgtcaaaaatgagttaaaaaatcatccaattactcaa cagaccaaattcacaatctatgaagaggtagacgtttacgcatctcgaaaaaaacttgat gatagttttacccaaaaacaacttaattcagtaacagattctggcatacagactatccta caaaaccatgttaatcaatatcttaacgacaaaggagagctcgatttcgctacagcattt agccccgaagggatcaaggcgatgaatgattccatacaaaccttaaatatcaataagaaa aacaaatcgcgcccccatcagcctatttacagcgtgcgaatctatgaagaaagtgataaa aaattctctattggtgagactttcaataaagataaaaaatatgcagaagccgacaaagga accaatctattttatgcgatctattggaacgatgaaagcaacagacgcacctacgaaacc gtgccactttatgaagtcatagaacatcaaaaacaatgttctgaattacctctcaatcaa aaattaccactacagaccaatccagaaaaaggacaatttttatttagtctctctccaaat gatttggtttatattcctacaaaagaagagagagaaatgccccaatctgtagattttcaa aaccttacaaaagaacagcacgatagaatctatcgctttgtgagttgtactgaaaatact gcctattttgttccaatgcctaatgcaaaggagattataaaaaatgaaaatggaaccaat aataaaagtgaacgcgtacaactacaacatttagatgagttagactctaatggaaagcct ctaatgatcaaagatgtttgttggaaaatagaagtaaacagagtaggaaatataacaaaa gtaaatcgctaa

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