Riemerella columbina: NYR17_06510
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Entry
NYR17_06510 CDS
T09247
Symbol
kdsB
Name
(GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
Organism
rcl
Riemerella columbina
Pathway
rcl00541
Biosynthesis of various nucleotide sugars
rcl01100
Metabolic pathways
rcl01250
Biosynthesis of nucleotide sugars
Module
rcl_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
NYR17_06510 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
rcl01005
]
NYR17_06510 (kdsB)
Enzymes [BR:
rcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
NYR17_06510 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
rcl01005
]
Lipid A
NYR17_06510 (kdsB)
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Gene cluster
GFIT
Motif
Pfam:
CTP_transf_3
NTP_transf_3
Motif
Other DBs
NCBI-ProteinID:
WKS94583
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Position
complement(1367313..1368053)
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AA seq
246 aa
AA seq
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MKKLKIIAVIPARYEASRFPGKLMQILGDQTVIATTYQNVVATQLFDEVFVATDSVLIFD
EIIRIGGKAVRTGQHETGSDRIAEAVRDIDCDIVVNVQGDEPFLKKEPLQDLTSVFHNDP
EQEISLASLKIKITEPTEIENPNNVKVITDLNGFALYFSRSVIPFQREMNAEAKYFRHIG
VYAFRKQALLTFASLEMSPLETLEKIECIRYLENGMKIKMIETDFVGVGIDVPEDLEKAK
RLLHLK
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactgaaaatcatagcggtgattcctgcacgctacgaagccagccgatttcca
gggaaattgatgcagattttgggcgatcaaaccgtcattgcgaccacttatcagaatgtg
gtggctacgcagttgtttgatgaggtttttgtggcgacagattcggttttgatttttgat
gaaatcatccgtataggcggcaaagccgttcgcacagggcaacacgaaacggggagcgac
agaatagcggaagccgttcgggatatagattgcgacattgtggtgaatgtgcaaggcgat
gaaccttttctaaaaaaagaaccgcttcaagatttgacttcggtgtttcataacgatcca
gaacaggaaatttccttggcatcgcttaagataaaaatcactgagcccaccgagattgaa
aaccctaataatgtgaaagtcatcacggatttgaacggatttgccctttattttagccgt
tcggtaattccttttcagcgggaaatgaatgccgaagcaaaatattttaggcacattggc
gtttatgcatttagaaaacaggcgttgctcacttttgcgagcttagaaatgtcgccattg
gaaacattggaaaagatagaatgcatccgttatttagagaacggaatgaaaatcaagatg
atagaaactgatttcgtgggtgtgggcattgatgttccagaggatttagagaaagccaag
cgccttcttcatctaaaataa
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