KEGG   Riemerella columbina: NYR17_07155
Entry
NYR17_07155       CDS       T09247                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
rcl  Riemerella columbina
Pathway
rcl03030  DNA replication
rcl03430  Mismatch repair
rcl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rcl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NYR17_07155 (dnaX)
   03430 Mismatch repair
    NYR17_07155 (dnaX)
   03440 Homologous recombination
    NYR17_07155 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcl03032]
    NYR17_07155 (dnaX)
   03400 DNA repair and recombination proteins [BR:rcl03400]
    NYR17_07155 (dnaX)
Enzymes [BR:rcl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     NYR17_07155 (dnaX)
DNA replication proteins [BR:rcl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     NYR17_07155 (dnaX)
DNA repair and recombination proteins [BR:rcl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     NYR17_07155 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA DNAX_ATPase_lid DNA_pol3_gamma3 AAA_22 RuvB_N AAA_30 AAA_14 AAA_5 Rad17 RCF1-5-like_lid AAA_7 TIP49 nSTAND3 DNA_pol3_delta_C AAA_16 RNA_helicase AAA_24 AAA_2 AAA_19 AAA_18 ABC_tran AAA_assoc_2 DUF815 NPHP3_N Mg_chelatase SRP54 GNAT_acetyltr_2 Sigma54_activ_2 DEXQc_Suv3 AAA_33 T2SSE TsaE RsgA_GTPase
Other DBs
NCBI-ProteinID: WKS94704
LinkDB
Position
complement(1500422..1501507)
AA seq 361 aa
MENFIVSARKYRPQEFETVVGQSHITDTLEHAIAENQLAQALLFCGPRGVGKTTCARILA
RKINEKDGSTSEDGFAYNIFELDAASNNSVDDIRELTDQVRYAPQIGKYKVYIIDEVHML
SSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKRITIEDIQLHLKKIA
DKEGISYEDDALFLIAQKADGALRDALSIFDRLVTFTQKNITLAKAAEVLNILDYDQYIQ
IVDFAHSADIPKVLTAFNDIVKKGFDPHIFIAGLGNHYRDLMMAQNPTTLDLIEVGENTK
EKFSQQSQKWTPQQLVEAIEICNHADINYKNSKNPRLTVEIALMQLASLTQGTEATKKKS
I
NT seq 1086 nt   +upstreamnt  +downstreamnt
atggaaaatttcattgtatcagcgcgtaaatatcgcccacaagagtttgaaacggttgtg
gggcaatctcatattacggatactttggaacacgccatagcggaaaatcagttggcgcag
gcacttttgttttgtggacctcgtggagtgggcaagaccacttgtgccagaattttagcc
agaaaaattaacgaaaaagatggctccaccagtgaagacggcttcgcgtataatatattt
gagttagatgccgcttctaacaactcggtggatgatattcgtgagctgaccgaccaagtg
cggtatgcgccgcagattgggaagtacaaagtttatattattgatgaggtgcatatgctg
tcttcggcggcgtttaatgcctttctgaaaactttggaagaaccgccagcacacgccatt
tttattttggcaaccacggagaagcacaaaattattccgaccatcttatcccgctgtcaa
atctatgattttaagcgtattacgatagaagatattcagcttcatctcaaaaaaattgcg
gataaagaaggaatttcttacgaagatgatgctttgtttttaatcgcgcagaaagccgat
ggtgcattgagagatgctttgtctatttttgaccgattggtcacttttacgcagaaaaat
atcacactggctaaagcggcagaggtgcttaatattttggactatgaccaatatatccag
attgtagattttgcgcattctgccgatattccaaaggtactcacagcgtttaatgatatt
gtgaaaaaaggctttgacccacatattttcatcgcggggttgggcaaccattatcgagat
ttgatgatggcgcaaaatccaaccactttagatttgatagaggtgggagagaatacgaaa
gaaaaattttctcaacaaagccaaaaatggacgcctcaacaattggtggaagccattgaa
atctgtaaccacgccgatatcaactataaaaattcaaaaaatccgaggctcacggtagaa
attgcattgatgcaattggcaagcctaacccaaggcacggaggcgactaaaaaaaaaagc
atttaa

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