KEGG   Riemerella columbina: NYR17_07400
Entry
NYR17_07400       CDS       T09247                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
rcl  Riemerella columbina
Pathway
rcl03030  DNA replication
rcl03410  Base excision repair
rcl03420  Nucleotide excision repair
rcl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rcl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NYR17_07400 (polA)
   03410 Base excision repair
    NYR17_07400 (polA)
   03420 Nucleotide excision repair
    NYR17_07400 (polA)
   03440 Homologous recombination
    NYR17_07400 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcl03032]
    NYR17_07400 (polA)
   03400 DNA repair and recombination proteins [BR:rcl03400]
    NYR17_07400 (polA)
Enzymes [BR:rcl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     NYR17_07400 (polA)
DNA replication proteins [BR:rcl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NYR17_07400 (polA)
DNA repair and recombination proteins [BR:rcl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     NYR17_07400 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NYR17_07400 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2 RNase_H_2 SIN1_PH ACS_CODH_B_C
Other DBs
NCBI-ProteinID: WKS94752
LinkDB
Position
complement(1556280..1559090)
AA seq 936 aa
MMDTTDKRLYLIDAYAMIFRGYYAFIRNPRLTTNGLDTSAIYGFTNSLIELIKRERPSHL
AVVFDVGRQNIRHEDFSDYKANRAETPEAIKIAVPYIHRILEAMHIPILGVEGYEADDVI
GTIAGKAEKQGYEVFMVTPDKDFAQLVTDHIKIYKPGLKGGDIEILGVPEVLAKYEIDHP
KQIIDYLGMMGDSVDNIPGLEGVGEKTAKKFIKEFGSMENLLANTHQLKGKLKEKVEASA
ERGLLSKKLATILCDAPIAFNETEYDLETPDFETVKAVFEEIEFRRLYENLYRAFTQKET
PAAAPVQENQPQTGGVQLDLFSDFEALEKSTTSKKNIQDTDHLYQYIDTEKGQRLLVENL
LSQSAVCFDTETTSLDEMQAELIGLSFSYKKGLAYYVPIPEDRAAAQAVVERFRPFFENE
EILKIAHNLKFDYKVLRQYQIEIQGALFDTMIAHYLLNPDGRHGMDYLSEMYLDYQPIEI
ESLIGKKGKNQKTLRAVSIEEQTQYAAEDADITFQLYELFAPQLKKEAVEAVFYDIEMPL
VKVLAEMELAGVALDEAWLAQESIDLERDLKDLETQIFKFTKEPFNLNSPKQLGEVLFEE
LKLDAKAKKTKTGQYSTSEEVLQKLSGKHDIIQLILDYRQLQKLKSTYVDALPQQISPVD
GRVHTTFAQTVAATGRLASNNPNLQNIPIRTLRGQQVRGAFVADQGFKIISADYSQIELR
LIAEISGEDTMIKAFQNGEDIHASTASKLFNIPIEEVSKLQRSQAKTVNFGIIYGQSAFA
LAEQTGLSRAAAKQLIDSYYETYPKLKAFMVEQVKKARQQGYVETIMGRRRHLKDINSNN
FVVRGHAERNAVNAPIQGSAADIIKLAMINISRTLSQQNLKTKMLLQVHDELVFEAPIDE
VEQAQALIKTEMEQAYVTQVPLLTEVGIGDNWLEAH
NT seq 2811 nt   +upstreamnt  +downstreamnt
atgatggataccacagacaaaaggctctatttaatagatgcctacgcaatgatttttagg
ggttattatgcctttatcagaaacccgagattgaccaccaacggtttagatacctcggct
atttatgggtttaccaactcactgatagagctcattaaaagggaaagaccaagccatttg
gcggtggtttttgatgtgggcaggcagaatattaggcacgaagatttttctgactacaaa
gccaaccgtgccgaaacaccagaggcgataaaaattgcggtgccttatatccatcgtatt
ttggaggctatgcacattcctattttgggcgtggaaggctatgaggcagatgatgtcatt
ggcactattgctggcaaggcggagaaacaaggctacgaagtctttatggtaacgccagac
aaagattttgcgcaactcgttacggatcatatcaaaatctataaaccaggactaaaaggt
ggtgatattgagattttaggcgtgccggaagttttagccaaatatgagattgaccaccct
aagcaaatcatagattatttaggaatgatgggggatagcgtggataacatcccaggttta
gagggcgtaggagagaagaccgccaaaaaattcatcaaagaatttgggtcaatggaaaat
ctattggcaaacacccaccagctgaaaggcaagttaaaagaaaaagtggaagcatcggcg
gagcgtggtttgttgtctaaaaaattagccaccatcctttgtgatgcgcctattgcgttt
aacgaaaccgaatacgacttagaaactccagattttgagacggttaaagctgtgtttgaa
gagatagaatttcgccgtttatacgaaaatctttatagagcttttactcaaaaggaaacc
cctgcggcggcgcctgttcaagaaaatcagcctcagacagggggtgtgcagttggactta
ttttcagactttgaggcattggagaaaagcaccaccagcaagaaaaatatccaagatacc
gaccacctttatcaatatatagacaccgaaaaagggcagcggctattggtggagaactta
ctctcgcagtccgccgtttgctttgatacggagaccacgagcttagatgagatgcaagcg
gaactgattggattaagcttttcttataaaaaaggcttggcgtactatgtgccgattcct
gaggatagagcggcggcgcaggcagtggtggagcgcttccgaccgttttttgaaaatgaa
gaaatccttaaaatcgcccacaacctcaaatttgattataaagtcctacggcagtaccaa
attgagatccaaggtgccctttttgatacgatgattgcccattatttgctcaatcctgat
ggcagacacggtatggattacctctcggaaatgtacttggattatcaaccgatagagata
gaaagtcttattggcaagaaagggaaaaatcagaaaacgctgcgtgccgtttccatagag
gagcaaacccaatatgccgccgaggatgccgatattactttccagctctacgaattattt
gcgccacaacttaaaaaagaagcggtagaggcggtgttttatgatatagaaatgcctttg
gttaaagttttagcggagatggaattggctggcgtagctcttgatgaagcgtggttagct
caagaaagcatagacttagagcgggatttaaaagacttagaaactcagatttttaaattc
acaaaagaaccgttcaatctgaactctcccaaacaactcggcgaggttttatttgaagaa
ttgaaattagatgccaaagccaagaaaacgaaaacagggcaatattccacctcggaggag
gtgctgcaaaagctttctggcaagcacgacatcatccaactgattttggattatcgccaa
ttgcagaagcttaaatctacctatgtagatgctttgccgcagcagattagccctgttgat
ggtagggtgcacactacttttgcacaaaccgtggcggctacgggcaggctggcgagcaac
aatccaaatttacaaaatatccccatccgaacacttagaggacagcaggtgcgtggggct
ttcgtggcggatcagggttttaaaatcatttctgcggactattctcaaatagagttgagg
cttattgcggagatttccggcgaagacacgatgattaaggcgttccaaaatggcgaagac
atccacgcatccacagcttctaaattgtttaatattccgatagaagaagtgtcaaaactg
caacgaagtcaggctaaaacggttaatttcggaattatctatgggcagagtgcttttgct
ttggctgaacaaacggggctttctcgggcggcagcaaaacagttgatagactcgtattat
gagacctaccctaagctcaaagcttttatggtggaacaggtcaaaaaagcccgccagcag
ggttatgtagaaaccattatgggtaggcgccgacatctgaaagacatcaattctaataac
tttgtggtgcgtggtcacgccgaacgaaatgcggtgaatgctccaatccaaggcagtgct
gcggatattattaaattagcaatgattaatatcagccgcacgctttctcagcaaaattta
aaaaccaaaatgctcctccaagtgcatgatgaactggtttttgaggcgcctatagatgag
gtagaacaagcccaagcgctcatcaaaacagaaatggaacaggcgtatgttacccaagtg
cccctcctcacagaggttggcatcggcgataactggttagaagcgcattag

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