Riemerella columbina: NYR17_07485
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Entry
NYR17_07485 CDS
T09247
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
rcl
Riemerella columbina
Pathway
rcl02024
Quorum sensing
rcl03060
Protein export
rcl03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
NYR17_07485 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
NYR17_07485 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NYR17_07485 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
rcl02044
]
NYR17_07485 (ffh)
Enzymes [BR:
rcl01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
NYR17_07485 (ffh)
Secretion system [BR:
rcl02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
NYR17_07485 (ffh)
Eukaryotic Sec-SRP protein
NYR17_07485 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
Zeta_toxin
AAA_22
CbiA
cobW
AAA_18
SRPRB
CLP1_P
APS_kinase
nSTAND3
SLFN-g3_helicase
AAA_16
AAA_30
ResIII
AAA_17
NTPase_1
KTI12
ATP_bind_1
KAP_NTPase
AAA_19
AAA_24
MMR_HSR1
AAA_14
AAA_33
6PF2K
ATPase_2
NPHP3_N
TsaE
DO-GTPase1
NACHT
ATPase
Motif
Other DBs
NCBI-ProteinID:
WKS94766
LinkDB
All DBs
Position
complement(1573815..1575182)
Genome browser
AA seq
455 aa
AA seq
DB search
MFNSLQDKLDKALHNLSGRGKITEINVAETVKEIRRALVDADVNYKIAKDLTKRVQEKAI
GQNVLTSLTPGQLMTKIVHDELVELMGGTQEGINLSGKPTIILIAGLQGSGKTTFSGKLA
NYLKKKRAKNPLLVACDVYRPAAIDQLKVLGNQTGIPVYTEEDNKNPSNIAENAINFAKA
NKHDVVIVDTAGRLAIDEQMMNEIKAIHYYIKPTETLFVVDSMTGQDAVNTAKAFNDALN
FDGVVLTKLDGDTRGGAALTIRSVVNKPIKFISTGEKMEALDLFYPERMADRILGMGDVV
SLVERAQEQFDEEEARKLQKKIAKNEFGFDDFLKQIQQIKKMGNMKDLLGMLPGVGKAIK
DVDISDDSFKHIEAIIHSMTPEERRRPSIIDMSRKKRIAKGCGRKLEEVNQLMKQFDQMS
KMMKIMQGPQGKQLMAMMGKMGGGMPNMGGLFGGR
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatagtttacaagataaattagataaagcgctgcacaacctctctgggcgtggt
aaaatcacagaaatcaatgtggcagaaaccgtaaaggaaattcgccgtgccttggtagat
gcagatgttaattataaaatcgctaaagacctgaccaaaagggtgcaggaaaaagccatc
ggtcagaatgttcttaccagtcttacccctggacagctgatgaccaaaattgtacacgat
gaattggtggaattgatgggcggcacgcaggaaggcatcaacctttcggggaagcctacc
attattcttattgcggggctacaaggttctggtaaaaccactttttctggaaaattagcc
aattacctcaaaaagaaaagagccaaaaatccacttttggtggcgtgtgatgtgtataga
cctgccgccatagaccagctgaaagttttggggaaccaaacgggcattcctgtttacacc
gaagaagacaataaaaatccatctaatattgcagaaaatgccatcaactttgctaaagcc
aacaagcacgatgtggtgattgtggataccgctgggcgtttggctattgacgagcaaatg
atgaatgaaattaaggcgatacattattacattaagcctacggaaacccttttcgtggtg
gattctatgacagggcaagatgccgtaaataccgcaaaagcctttaatgatgccctcaat
tttgatggcgtggtgctgaccaaattagacggtgatacccgcggtggtgcggcgcttacc
atccgttctgtggtgaacaaaccgattaaatttatctccacaggtgagaaaatggaagcc
ttagacctcttctatccagagagaatggcagaccgtattttgggaatgggagatgtggtt
tccttagtagaaagggctcaggagcagtttgatgaagaagaagcccgcaagctacaaaag
aaaatcgccaaaaacgaattcgggtttgatgatttccttaagcaaatccagcaaatcaaa
aaaatggggaatatgaaagatctcttggggatgctcccaggcgtaggcaaggcgattaaa
gatgttgatatttccgatgattcctttaaacatatagaagccattatccactcgatgacg
ccagaggaacgcagaagaccgagtatcattgatatgagccgtaaaaaaagaattgccaaa
ggttgtggcagaaaattagaagaagtcaaccaactgatgaaacaatttgaccaaatgagc
aaaatgatgaaaataatgcaaggaccacagggtaaacaactgatggcgatgatgggtaaa
atgggcggaggaatgccaaatatgggcggactattcgggggaagatag
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