Riemerella columbina: NYR17_07880
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Entry
NYR17_07880 CDS
T09247
Symbol
lysS
Name
(GenBank) lysine--tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
rcl
Riemerella columbina
Pathway
rcl00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
NYR17_07880 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rcl01007
]
NYR17_07880 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rcl03016
]
NYR17_07880 (lysS)
Enzymes [BR:
rcl01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
NYR17_07880 (lysS)
Amino acid related enzymes [BR:
rcl01007
]
Aminoacyl-tRNA synthetase
Class II (A)
NYR17_07880 (lysS)
Transfer RNA biogenesis [BR:
rcl03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
NYR17_07880 (lysS)
Prokaryotic type
Other AARSs
NYR17_07880 (lysS)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
tRNA-synt_2d
DUF1667
Motif
Other DBs
NCBI-ProteinID:
WKS94842
LinkDB
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Position
complement(1662936..1664633)
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AA seq
565 aa
AA seq
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MQLSEQEIIRREKLQKLSQMCINAFPADEYAISDTTASIKQNFQEGKAVKLAGRLMSRRI
QGKASFAELQDAEGRIQIYFNRDEVCPGEDKTLYNEVYKHLLDIGDIIGIEGELFKTQVG
EMTVMVKNFTLLTKALRPLPQAKIDENGVVHDAFNDPELRYRQRYVDLTVNPQVKEIFVK
RTKLFNAMRQFFNDAGYFEVETPILQAIPGGAAARPFITHHNALDIPLYMRIANELYLKR
LIVGGFDGVYEFSKNFRNEGMDRTHNPEFTAMEIYVAYKDYHWMMDFTEKLLEHCATAVN
GTPVSQFGEHTINWKAPYPRISMTEAIKKYTGFDITGKTEEELRTFAQSIGIEVNETMGK
GKLIDEIFGEKCEGNFIQPTFITDYPIEMSPLTKKHRSQEGLTERFELMVCGKEIANAYS
ELNDPIDQRERFEEQLKLSEKGDDEAMFIDQDFIRALEYGMPPTAGLGIGMDRLVMFLTN
NASIQEVLFFPQMKPEKLQPKVELNEEEQIILSILDRQEGAQPLAEVKNQAGLSGKKWDK
ATKNLTKHHLIKVEKIDEVLMMSKS
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcagttatccgaacaagaaattatccgtagagagaaattacagaagctgtcacaaatg
tgcatcaatgcctttccagctgatgaatacgctatatctgataccaccgccagcatcaaa
caaaacttccaagaaggcaaagccgtaaagttggcaggacggttgatgtcgcgccgtatt
caggggaaagcttcctttgcagaattgcaagatgccgaagggcgcattcagatttatttc
aatcgtgatgaggtatgcccaggggaagataaaaccctttacaacgaggtttataagcac
ttgttagacatcggcgatattatcggtatagagggcgaattgttcaaaacccaagtggga
gagatgacggtaatggttaaaaattttacccttctcaccaaagcgcttcgcccgctacca
caagctaaaatagatgaaaacggcgtggtacacgatgcctttaacgaccctgaactccgc
tacagacagcgctatgtggatttaacggttaaccctcaggttaaagaaatttttgtgaag
agaaccaaactcttcaatgcgatgcgccagttttttaatgatgcaggctattttgaagtg
gaaacgcctatcctacaagccattcctgggggagcggcagccagaccattcatcacccat
cacaatgctttggatattccgctatatatgaggattgccaatgagttgtatttaaaacgc
ttgattgtcggcggttttgatggcgtgtatgaattctcaaaaaacttccgaaacgaagga
atggatagaacgcacaacccagaatttaccgcgatggaaatctatgtggcgtataaagat
taccactggatgatggacttcacggaaaaacttttggaacactgcgctacggcggttaac
ggcacgccagtttctcagtttggggaacataccatcaattggaaagccccatacccacgg
atttctatgacggaagctattaaaaaatacacaggttttgatattacaggaaaaaccgag
gaggagctcagaactttcgcgcaatctattggtattgaggtgaatgaaacgatgggcaaa
ggcaaacttatcgatgagatttttggcgaaaagtgcgaaggcaactttatccagccgact
ttcatcacggattatccgattgaaatgtcgccgctgaccaaaaaacaccgtagccaagag
ggacttacagagcgctttgaattgatggtttgcggaaaagaaattgcgaacgcttactct
gagcttaacgaccctatcgaccaaagagagcgctttgaggaacaacttaaactatccgaa
aaaggcgatgatgaggcgatgttcatcgatcaagatttcatccgtgccttggaatacgga
atgccgccaacagctggtttaggcatcggtatggacagattggtgatgttcttaaccaac
aatgcctctatccaagaggtgctgttcttcccacagatgaaacccgaaaaactacaaccc
aaagtagaactcaacgaggaggaacaaatcatcctctccatattagaccgccaagaaggt
gcccaacctttggcagaggtgaagaaccaagcggggctttctggcaaaaaatgggacaaa
gccacaaaaaacctgaccaagcaccatttaatcaaagtagaaaaaatagatgaggtgctg
atgatgagcaaaagctaa
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