Riemerella columbina: NYR17_07920
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Entry
NYR17_07920 CDS
T09247
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rcl
Riemerella columbina
Pathway
rcl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NYR17_07920 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcl03021
]
NYR17_07920 (rpoC)
03400 DNA repair and recombination proteins [BR:
rcl03400
]
NYR17_07920 (rpoC)
Enzymes [BR:
rcl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NYR17_07920 (rpoC)
Transcription machinery [BR:
rcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NYR17_07920 (rpoC)
DNA repair and recombination proteins [BR:
rcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NYR17_07920 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WKS94849
LinkDB
All DBs
Position
complement(1669915..1674180)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSRFNKISIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQQGIAKKADGSDFEEMEFLTEEEYLDILETLPVENQYLDD
SDPNKFVAKMGAEAIEELLRRIDLDQLSYDLRHKAHNETSKQRRTEALKRLSVVEALRDA
NTRMINRPEWMVMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPTLELHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEAHSTEDHKVK
GEGLVFYSPEEAEIAYNEGRASLNAKVKCKLPVKENGILVTKLIETTVGRILFNQIVPEE
IGYINELLTKKSLRNVIGKILAETDFPTTVKFLDRMKDLGYTNAFKGGLSFSLADIVVPE
EKRTMIGNAVESVDEIKANYNMGLITDTERYNQVIDVWTNTNANLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSVGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGVEVTPLKKNDEIVE
KLSERILGRISLHDIYDPENDNIIVEADALIDEDLAKKIEDAGIESVEVRSPLTCESKRG
ICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAK
RDGIVEMDEVRTITSEDEEGNKAEIVVSRSTEFRLVADNANRTPIMVANVPYGSILSVKP
GDKVKKGDLIAKWDPYNAVIIAETSGKVEYEDIIKGVSFQLEIDEQTGFEEKVISESRNK
KAVPTLRVVDSKGVEQKSYNLPVGAHLMVNDGEKIKAGKILIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVESKTGEIKKYLVKLSNQILVQEN
DFVKAGAPLSDGSVTPNDILAIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVEIVDGGDTQFLEGSLEHKLDFIQENERVFGMKVVTDPGDSQELKAGQMITARELRDE
NSKLKREDLKLVEVREALTATAHPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
VDALNGLKENVIVGHRIPAGTGLKDYQSFIVGSNKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtagatttaataaaatctcaatcggtttagcctcacca
gagtctattttacaagaatcaagaggagaggttctaaaaccagaaacgatcaactaccgt
acccacaaaccagaaagggatggacttttctgcgagaaaatattcggtcccgttaaggat
tacgaatgtgcctgcggaaaatacaaacgtatccgttacaaaggtatcgtgtgtgaccgc
tgtggggtagaggtgacagagaaaaaagtgcgtagagagcgcatcgggcatatcaacttg
gtggtgccagtagcacatatttggtatttccgctctttaccaaacaaaataggttatctt
ttaggattaccatctaaaaaattggatatgattatctattatgaaagatatgtcgttatc
caacaaggtatcgctaaaaaagcagacggttctgattttgaagaaatggaattcttaaca
gaagaagaatatttagacattttagaaaccctgccagtagaaaaccaataccttgatgat
tctgaccctaacaagtttgtagctaaaatgggtgcagaagccatagaggagcttcttaga
agaattgatttagaccaactctcttatgatttaagacacaaggcacacaacgaaacttct
aaacaaagaagaaccgaagccctcaaaagactctccgtggtagaagcccttagagatgcc
aacacccgtatgatcaaccgcccagagtggatggtgatgcgtgtgctaccggtaatcccg
ccagagcttagaccattggtgccgttagatggtgggcgtttcgccacttcggatttaaat
gacctataccgaagagtcatcattagaaacaaccgtctgaaaagacttcttgaaatcaaa
gccccagaggtgattttaagaaacgagaagcgtatgcttcaagaagcggtagattcatta
tttgataacaccagaaaatcatcagcggtaaaatccgagagcaacagaccattaaaatca
ttatccgattctttaaaaggaaaacaagggcgtttccgtcagaacctcttagggaaaagg
gtggactactctgcgcgttccgtaattgtggtaggaccaactttggaactccacgaatgc
ggtatccctaaagatatggccgccgaactttacaaaccatttatcatcagaaaattgatt
gaaagagggattgtaaaaactgtaaaatcggcaaagagaatcatcgatagaaaagaacct
gtggtgtacgacatccttgaaaatgtaatgaaaggacaccccgtacttctcaacagagcg
cctaccctccaccgtttggggatccaagcgttccaaccaaagatgatcgaagggaaagcc
atccagctccacccattggtaaccacggcttttaacgccgacttcgatggtgaccagatg
gcggtgcacttgccactcgggccagaggcgattttggaagcacaacttttgatgctcggt
tctcagaacattttgaaccctgccaacggctcgccaattacggtaccatctcaggacatg
gtattggggctttattttatgactaaagaagcccactctaccgaagaccacaaggtgaaa
ggcgaagggctggtattctactctccagaagaagcagaaattgcttacaacgaaggtaga
gcttccctcaatgccaaagtgaagtgtaaactcccagtaaaagagaacggtattttagta
accaaactcatagaaaccactgtaggtagaattttatttaaccaaattgtaccagaagaa
atcggatacatcaatgagcttttaacgaagaaatcattgagaaatgtcatcggtaaaatc
ttggcagaaaccgacttcccaaccacggttaaattcttggatagaatgaaagatttaggt
tataccaacgcctttaaaggtggtctttccttcagccttgcagatattgtggtgccagaa
gaaaaaagaacaatgattggtaatgccgtagagagcgtagatgagattaaagccaactat
aatatggggcttatcacagatacagagcgttataaccaagtgattgatgtctggaccaat
accaatgccaacctcaccgagatgattatgagccgaatgaaaaccgaccaaggcggcttc
aactcggtatatatgatgttggattctggagcgaggggttccaaagagcagatccgccag
ctttcagggatgcgtggtttgatggcaaaacctcaaaaagcaggttccgtaggggcagag
attattgaaaaccctattgtagccaactttaaagaggggctttccatcttggagtacttt
atctctacccacggtgcgcgtaaaggtcttgcggataccgcccttaaaacggcagatgcg
gggtacctcaccagaagattggtggatgtggcacaagatgtcatcattaccgaagatgac
tgtggtacactaagaggtgtagaagtaacgccgcttaagaaaaatgatgaaattgtagaa
aaactatctgaaagaattttaggtagaatttctcttcacgatatttatgacccagaaaac
gataacatcatcgtagaggcagatgccctaattgatgaagatttagcgaagaaaatagaa
gacgcaggtatagaatctgtggaagttcgttcgccgctcacttgtgagtctaagcgaggc
atctgtgctaagtgttacggtagaaacttagccactggcaagatgatccatatgggagaa
gctgtgggcgttatcgcggcacaatccattggggagcctggtactcagctgactttgaga
accttccaccaagggggtactgcggggaatgtctcagaaaatccttccatcgttgccaaa
agagatggtatcgtggagatggacgaggtaagaaccattacttccgaagacgaagaaggc
aacaaggcagaaatcgtggtatcgcgttctacggaattccgtttggtagcagataatgcc
aacagaacaccaattatggttgcgaatgtaccttatggttccatcttatctgtaaaacct
ggggacaaagtgaaaaaaggagacctcattgcgaagtgggatccttataacgcggtaatt
attgccgaaacttcaggtaaagtagagtacgaagacatcattaaaggggtatctttccaa
cttgaaattgatgaacaaacaggatttgaggaaaaagtaatctccgaatcaagaaataaa
aaagccgtacctacacttagagtggtagattccaaaggcgtagagcagaaatcttacaac
ttgccagtgggcgcccacttaatggttaacgatggcgagaagattaaagcaggtaaaatc
ttgattaaaatcccaagaaaatcagcgaaagcaggggatatcactggtggtcttccaagg
gtaaccgaactctttgaagccagaaacccttctaaccctgccgtagtaacggagattgat
ggggtggtatcttacggtaaaatcaagagaggtaaccgtgagctcatcgtggagtctaaa
acgggagaaattaagaaatatctcgttaaactatctaaccagattttggttcaagaaaac
gacttcgtgaaggcgggagcaccactttctgatggttctgttacgccgaacgacatctta
gcgattaaaggccctaccgccgtacaagagtatttggtgaatgaaattcaggaagtttac
cgtctacaaggggtaaaaattgatgacaaacactttgaaatcattgtaagacagatgatg
accaaagtagaaattgtagatggtggtgatactcaattcttagaaggcagcttagagcac
aagttagacttcatccaagaaaacgaaagagtattcggaatgaaagtcgtaaccgaccct
ggagactctcaagaactgaaagctggtcaaatgattacagcaagagagttgagagatgaa
aactctaagctgaagcgtgaagatctgaaactggtagaagttcgtgaggcgcttactgca
acggcacatcctgtattacaagggattaccagagcggcattgcagaccaagtcgtttatg
tcggcagcatcgttccaagaaaccacgaaggtgcttaacgaggcagcagtatctggtaag
gtagatgcactgaacggtcttaaagaaaatgttatcgtaggacacagaattcctgcaggt
acgggacttaaagattatcagagctttatcgtaggctctaacaaagagtttgaagattta
aactaa
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