Riemerella columbina: NYR17_08345
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Entry
NYR17_08345 CDS
T09247
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
rcl
Riemerella columbina
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcl03009
]
NYR17_08345 (rimO)
Enzymes [BR:
rcl01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NYR17_08345 (rimO)
Ribosome biogenesis [BR:
rcl03009
]
Prokaryotic type
ribosomal protein modification factors
NYR17_08345 (rimO)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
TMF_TATA_bd
Motif
Other DBs
NCBI-ProteinID:
WKS94925
LinkDB
All DBs
Position
complement(1777270..1778586)
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AA seq
438 aa
AA seq
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MRTKSTGKKKINVVTLGCSKNLYDSEVLMGQLKANGKEVTHEQQRGDIVVINTCGFIDNA
KEESINTILDFVEAKNRGEVEKVFVTGCLSERYKPDLIKEIPDVDQYFGTRDLPILLKHL
GADYKHELVGERLTTTPKHYAYLKISEGCDRPCSFCAIPLMRGGHISTPIEKLVEEAEKL
ARKGTKELILIAQDLTYYGLDIYKKRALADLLRALVKVDGIEWIRLHYAFPTGFPEEVLE
VIKQEPKVCNYIDIPLQHINSDLLKSMKRGTTHEKTNALLSKFREKVPDMAIRTTLIVGY
PGETEERFQELKDWVAEQRFDRLGCFTYSHEENTTAYALEDDVPQEVKEARVEEIMALQS
QISWEKNQEKIGKTYRCIFDRKEGAYFVGRTEFDSPDVDNTVLVPAENTYLSIGAFADVK
ITAAEEFDLYGEVVESAE
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagaacgaaatctacgggaaaaaagaaaatcaatgtggtcactttgggctgttctaag
aatttatacgattctgaagtcctgatgggacagctgaaagccaatggcaaagaggtgact
cacgaacagcaacgcggtgatattgtggtgattaacacttgcggatttattgataatgcc
aaggaagaatccatcaataccattttagatttcgtagaagccaaaaatagaggcgaggta
gaaaaggttttcgtaacaggttgtttatctgaaagatacaaaccggatttaattaaagaa
atccccgatgtagaccaatattttggcactcgggatttaccgattttgctcaaacattta
ggcgcagactacaaacacgagctcgttggcgagcggctgaccaccacgccgaaacattac
gcctatttaaaaatttccgaaggttgcgaccgcccttgttccttttgcgctattccactg
atgcgcggtgggcatatctctactccaattgaaaagttggtggaagaagccgaaaaatta
gcccgcaaaggcaccaaggaactcattttgattgctcaagatttaacttattacggctta
gatatttacaaaaaaagagccttggcagacttgctcagagccttggtaaaggtagatggc
atagagtggattcggttgcattatgcctttcctacgggctttccagaggaggtgttagag
gtcattaagcaagaaccgaaggtgtgcaactatattgatattccgctacaacacatcaat
tcggatttgttaaaatcaatgaaacgcggaaccacgcacgaaaaaaccaacgctttatta
tcaaagttccgagaaaaagtgccagatatggcaattagaaccacgctcattgtgggttac
cctggcgaaacggaagagcgtttccaagagttgaaagattgggtggcagaacagcgcttt
gaccgtttgggctgttttacctattctcacgaagaaaataccaccgcttatgctttggaa
gatgatgttcctcaggaagttaaagaagcgcgagtggaagagattatggcgctacaatct
caaatttcttgggagaaaaaccaagagaaaataggcaaaacttaccgctgcatttttgat
agaaaagagggcgcttattttgttggaagaaccgagtttgactccccagatgtggacaac
accgttttggttcctgccgaaaatacctatctttctattggtgctttcgctgatgttaaa
atcacggcggcagaggagtttgacttatacggcgaggtggtagaaagtgcggaatag
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