Riemerella columbina: NYR17_08555
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Entry
NYR17_08555 CDS
T09247
Name
(GenBank) helix-turn-helix domain-containing protein
Organism
rcl
Riemerella columbina
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
HTH_40
AAA_30
AAA_19
UvrD_C_2
AAA_22
Herpes_Helicase
AAA_24
AAA_16
Viral_helicase1
AAA_5
Pif1_2B_dom
ATPase_2
NACHT
HTH_5
AAA_7
DEAD
NTPase_1
HTH_7
ATPase
HTH_29
HTH_23
TsaE
HTH_28
AAA_18
HTH_24
HTH_IclR
AAA_25
AAA_29
Motif
Other DBs
NCBI-ProteinID:
WKS94966
LinkDB
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Position
complement(1822315..1824459)
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AA seq
714 aa
AA seq
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MNSDIFELLEFTNRSVFLTGKAGTGKTTFLMDFVRRTKKSHIILAPTGIAAINAGGVTIH
AMFGLPLRAFFPTHDRVDERLGNNIADLFKHFRFRKNKLKLLREVELIIIDEVSMLRADV
LDMMDFALRHIRRNGKPFGGVQMLFIGDLHQLPPVVRDENILREYYKTPFFFSAKALENL
ELITIELTKVYRQKDEDFLKILNEIREGHLSDEGYQQLNERYLPDFEPQKETYVYLTSHN
KMADSINQKKLQELKGKSYTYKAKITGEFKENQYPNDEELELKVGTQIMFIRNDASGERH
YYNGKLAEVMVLSPTEITVLIEGDDKTYTLKKETWENKRYTLGEDKSVEEEVLGSFEQYP
IRLAWAVTIHKSQGLTFDRVIIDAGQSFASGQVYVALSRCRTLQGIILKSEITKNAVFND
RRVNRFQDDTHANERITEIINTEKHAYALDKVLSRIEPLWFERDWGNWYNQALVSRDLNR
RKAEKLYQALLPKLKNWNTIYEKLQKIIAAKVHKMGQGQDTWQSIEEKTRGAVNFYYNEV
HNEFFTPIKHFYAETKGAKGLKAFNEVTHTLLEDLEDYLNQLKTAHLMETALFDAQNDTK
VEINALKVPTHILTFQLFEQGKTIAEIAEERNLVPSTIYGHLAKFAERGLLDLSRIISKE
KDQRFREQYQKAPQENLNDWKKHLPEDFEYHEIRLLWNHYRYLDEKQAEDHPED
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaattcggacatctttgagcttttagaatttaccaatcgctccgtttttttaacgggc
aaagcaggaacaggaaaaaccacctttctaatggacttcgtgaggcgtaccaagaagagc
catatcattctggcgcccacgggcatcgccgcgattaacgctggaggagtcacgatacac
gcgatgtttggcttaccattgcgcgcgttctttccaacacatgatagggtggatgagcgc
ttgggcaataacatcgcagacttgttcaagcacttcagattccgaaagaataagctcaaa
ctactccgtgaggtggagttaatcatcattgatgaggtctcaatgctccgcgccgatgtc
ttagatatgatggatttcgccctaaggcacatcagaaggaacggaaagcctttcggaggc
gtgcagatgctcttcattggagatttacaccagctgccaccagtggtaagagatgaaaac
atcctccgtgagtattacaaaaccccgtttttcttcagcgctaaggcgttagagaactta
gaactcatcaccatagagctcaccaaggtttacagacaaaaagatgaagattttttaaaa
atcctcaatgaaattagagaagggcacctgagtgatgaaggctaccaacagctcaatgaa
cgctacctccccgattttgaaccccagaaggaaacctatgtctatttgacctcgcataat
aagatggcggatagcatcaaccagaaaaaactccaagaactcaaaggaaaatcttatact
tataaagccaaaatcactggcgagtttaaagaaaaccagtaccctaacgatgaggagctg
gagcttaaagtcggtacacagattatgttcatccgcaacgatgccagtggcgagcgccac
tattataatggcaaactcgcagaggttatggtgctctctcccacagaaattaccgtcctg
atagagggcgatgacaaaacttataccctaaaaaaagaaacttgggaaaacaaacgctat
accttgggcgaagacaagagcgtggaggaggaagtcttaggcagttttgagcaatatcct
atccgtttggcgtgggcggtcaccatccacaagtcccaagggcttacttttgatagggtg
attatagatgcagggcaatcctttgcctcggggcaggtttatgtagcactttcgcgctgc
cgcaccctccaaggcatcattctcaaatccgaaattaccaaaaatgccgtatttaatgac
cgccgtgttaatcgctttcaagacgatacccacgccaacgagcgcatcaccgaaatcatc
aacaccgaaaagcacgcttacgccttagataaggtactctctcgcatagagccgctttgg
tttgagcgggattggggcaattggtacaatcaagccttggtctctcgcgatttaaaccgc
cgcaaagccgaaaaactttaccaagccctcctccctaagctaaaaaattggaataccatc
tatgagaagttgcaaaagattatcgccgcaaaggtgcataagatggggcaagggcaggac
acttggcagagcatagaagagaaaacccgaggcgccgttaatttctattataatgaagtt
cacaacgaattctttacacccattaagcatttttatgccgaaaccaaaggcgccaagggc
ttaaaggcgttcaacgaggttacccatacccttttagaagacttagaggactacctcaac
cagctcaaaaccgcccatttaatggaaactgccctctttgatgcgcagaatgacaccaaa
gtagaaatcaacgctctaaaagtgcccacgcatatcctcacttttcaactttttgagcaa
ggcaagaccattgcagagattgccgaagagcgcaacttggtgccttctaccatttatgga
catctggcgaagttcgctgagcgtggattattagatttgagccgaatcattagcaaagag
aaagatcaacgcttccgtgaacagtaccagaaagccccacaggagaaccttaacgattgg
aaaaagcacctcccagaagattttgaataccacgaaatacgcctcctttggaaccactac
cgttatttagatgaaaaacaagccgaagaccacccagaggactaa
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