Riemerella columbina: NYR17_09115
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Entry
NYR17_09115 CDS
T09247
Name
(GenBank) fumarate reductase/succinate dehydrogenase flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
rcl
Riemerella columbina
Pathway
rcl00020
Citrate cycle (TCA cycle)
rcl00190
Oxidative phosphorylation
rcl00650
Butanoate metabolism
rcl00720
Other carbon fixation pathways
rcl01100
Metabolic pathways
rcl01110
Biosynthesis of secondary metabolites
rcl01120
Microbial metabolism in diverse environments
rcl01200
Carbon metabolism
Module
rcl_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rcl_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
rcl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
NYR17_09115
00650 Butanoate metabolism
NYR17_09115
09102 Energy metabolism
00190 Oxidative phosphorylation
NYR17_09115
00720 Other carbon fixation pathways
NYR17_09115
Enzymes [BR:
rcl01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
NYR17_09115
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
DAO
HI0933_like
GIDA
Pyr_redox_2
NAD_binding_8
FAD_binding_3
AlaDh_PNT_C
Thi4
Lycopene_cycl
Motif
Other DBs
NCBI-ProteinID:
WKS95066
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Position
1925633..1927645
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AA seq
670 aa
AA seq
DB search
MSKLDSKIPAGPLKDKWKNHKDHMNLVAPNNRDKIDVIVIGTGLAGGSAAATLAEQGYNV
KAFCYQDSPRRAHSIAAQGGINAAKNYQGDGDSIYRLFYDTIKGGDYRAREANVYRLAEV
SANIIDQCVSQGVPFGRDYGGQLDNRSFGGVQVKRTFYAKGQTGQQLLLGAYSAMSRQIG
KGRIKMYNRHEMMDLVIVDGKARGIIARNLVTGEIERHSAHAVVIASGGYGNVYFLSTNA
MGSNCSAAWKIHKKGAYFANPCFVQIHPTCIPVHGTQQSKLTLMSESLRNSGRIWVPKKI
EDAVAIREGKLKPEDIKEEDRDYYLERRYPAFGNLVPRDVASRAAKERCDAGFGIENNET
KEGVFLDFSTEIMKKGNEAALERNLHNPTQQQIYDLGKAWVEEKYGNLFQMYEKITADNP
YKTPMKIYPAVHYTMGGVWVDYNLMSTIPGCFVIGEANFSDHGANRLGASALMQGLADGY
FVLPYTIADYLSADIRTGKIPTDTAAFDEAEKAVTDRINFFMTNKGTHSVDYFHKKLGHI
MWNKVGMGRTPEGLREAIQEIEEVRNDFWKNVKVPGEANSMNPELEKACRVADFLELGQL
MAIDALKREESCGGHFRWDHATEDGEAKRDDIHFKYVAAWQYNGADINNEILHKEELVYD
NIEVKTRSYK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattagattctaaaattccagcaggtccacttaaggacaaatggaaaaatcat
aaagaccatatgaacttggtggcgcctaataaccgtgataaaattgatgttatcgtgatc
ggtacagggttagcgggaggttctgccgcagcaaccttagccgagcaaggttataatgta
aaagcattctgttaccaagattctccaagaagagctcactctattgctgcgcaaggtggg
attaacgccgctaaaaattaccaaggtgatggcgactctatctacagacttttctatgat
accataaaaggtggtgactaccgtgccagagaggcaaatgtgtaccgccttgcagaagtt
tctgccaacatcatcgaccaatgcgtgtcccaaggggtgccttttggtagagattacggc
gggcagttggacaaccgttcttttggtggggttcaggtaaaaagaactttctatgccaaa
ggtcaaacggggcaacagcttcttttaggtgcttattccgcaatgagccgacaaattggt
aaagggcgcatcaaaatgtacaaccgccacgagatgatggatttggttattgttgatggc
aaagcccgaggcatcatcgccagaaatttagtcactggagagattgaaagacactcggca
cacgctgtggtgatcgcttctggtggatacggaaatgtatatttcttatcaaccaacgct
atgggctctaactgttctgcagcgtggaaaatccacaaaaaaggtgcttatttcgcgaac
ccttgtttcgtgcaaatccacccaacttgtatccctgtacacggcacccagcaatctaaa
ctaacgctgatgtccgaatctttaagaaactctggaagaatctgggttccgaaaaagata
gaagatgccgtagccattagagaaggtaaacttaagccagaagacatcaaagaagaggat
agagattactaccttgaaagaagataccctgcgtttggtaacttagtgcctcgtgatgta
gcttccagagccgctaaagagcgttgtgatgcaggcttcggtattgaaaacaacgaaacc
aaagaaggcgttttccttgatttctctaccgaaattatgaaaaaaggaaacgaagccgcc
ttagaaagaaacctccacaaccctacccaacaacaaatctacgatttaggaaaagcttgg
gtggaagaaaaatatggaaacctcttccagatgtatgaaaaaatcacggcggacaatcct
tataaaacaccgatgaaaatctatcctgccgtacactacaccatgggaggcgtttgggta
gattacaacttgatgtctaccattcctggatgtttcgtgattggggaagctaacttctct
gaccacggtgccaacagattgggtgcttcggcattgatgcaaggtttggcagacggttat
ttcgtattgccttacactattgcagactacctgtctgccgacattagaacaggaaaaatc
ccaaccgataccgccgcttttgatgaagccgaaaaagccgtaaccgatagaatcaacttc
tttatgaccaataaaggaacgcattcggtagattatttccacaaaaaattaggacacatt
atgtggaataaagtgggtatgggtagaacgccagaaggtttaagagaagccattcaggag
atagaagaggtaagaaacgacttctggaaaaatgtaaaagtacctggggaagccaacagt
atgaacccagaattagaaaaagcgtgtagagtggcagacttccttgaattagggcaactg
atggctatagacgctctaaaaagagaagaatcttgtggtggacatttccgttgggatcac
gccacagaagacggcgaagctaagagagatgatattcactttaaatatgtagccgcttgg
cagtataacggtgctgatattaacaacgaaattctacataaagaagaactcgtttacgat
aacattgaagtgaaaacaagaagttataaataa
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