Rosa chinensis (China rose): 112164164
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Entry
112164164 CDS
T06020
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112164164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112164164
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112164164
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112164164
Complex C
U4/U6.U5 tri-SnRNP related factors
112164164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
HA2_C
AAA_22
Helicase_C
nSTAND3
AAA_19
ABC_tran
DEAD
ATPase
Swi5
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
112164164
NCBI-ProteinID:
XP_024156163
LinkDB
All DBs
Position
5:complement(79169804..79172086)
Genome browser
AA seq
706 aa
AA seq
DB search
MASSSSPVQVLYESGKSDSDKKRFRSQENYDDEIIVSPEQNENQERPVKRRSDSSYEQSV
EERLLGPREREAEPNSIKEKLKQERKTLRIYGYRDVLLEAVESNQVVVIVGDTGCGKTTQ
IPQYLYEAGYGKKGRIGCTQPHGFTARSAAARVSQEMGVKLGHDVVGYSIPFEDCTSEKT
VLRYMTDGTLLHQLYGEPELISYSVLMVDEAHERTLSTDILVGLLKDILPSRTNLKLLIS
TATLDCAEKICELFDSALVLDIRILSHYPPHHQDDHVFYLEATEANNYLEANYLDAAIRT
ALEIHENEPSGDILVFLTDRDEIEVAAQQLHQPHQLSICPFYENMPAELEAQFFETTPKG
VRKVVLATSIAETFWPTKAGVNYVVDSGFCKNKSYDPSSEKERLQLTRISKASAMLRGSQ
ALLGKCFRLYKRNDHGNPKPEVQRSNLTNVVLTLRHLGVNDSTRFHFLDPPPTEALRKAS
QLLFALGALNNVGELTEVGERMAEFPVDAMLSKAIVASDQYKCSNEVISIVAMLSAGDHD
SVFHHPEDKQVDADNARMHFHSGNVGDHIALLKVYNEWKDANYSAQWCHENYIQIRTMKR
ARDIRDQLERLLEKVGIELSSNPFDIEPIKKAITSGFFAHSAKVQKTSYIPVKQPPKNLH
IHYRSGLARMLPKCVLYHELDLETNQYMRQVTEINSEWLQEVAPYY
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcgtcgtctcctgtgcaagtgctctatgagtccggcaaatcagattccgat
aagaaacggttcaggagtcaagaaaattatgatgatgagattattgtttcaccagagcaa
aatgaaaatcaagagagaccggtgaaaagacgaagtgattcctcatatgagcagtcggta
gaagaaagattgctcggtccaagagagagggaggcggagccgaatagtatcaaggagaag
ctcaaacaggagagaaaaacattacgaatctacgggtatcgtgatgtattgctggaagct
gtggaaagcaatcaggttgtcgttatcgttggcgatactggttgtggaaaaactacacag
ataccccaatatctttacgaggctggatatggtaaaaaaggaaggattgggtgcacacaa
ccacatggatttactgccaggagtgctgctgctagagtttctcaagaaatgggtgtcaag
ctagggcatgatgtggtgggttattccataccttttgaagattgcacatctgaaaagact
gttttgagatacatgactgatggaacattgttgcatcaactctatggagaaccagagttg
ataagctatagtgtgttgatggtagacgaggcccatgagagaacactctcaactgatata
ctagttggattattgaaggatattttgccatctagaaccaaccttaaactgctcatctca
acagcaactcttgattgtgctgaaaagatttgtgaactttttgattcagctctagttctc
gacattcgaattctgagccattatcctcctcatcaccaggacgaccacgtgttctacttg
gaagcaacagaagctaataattacttggaagctaattacttggatgcagctattcgtaca
gcacttgaaattcatgagaatgaaccaagtggagatatattggtgtttctcactgatcga
gacgagatagaagtagcagcacaacaattgcatcagcctcatcagctctctatttgcccc
ttctatgaaaacatgcctgccgagcttgaagcacaattttttgagaccacacctaaaggg
gtcaggaaggttgtccttgccacaagcatagctgaaacattttggccgactaaagctggg
gtcaattatgtggttgactcggggttttgcaagaataagtcttatgatccaagcagtgag
aaggagcgattacagttaactcgcatttcaaaagcatcagccatgctaaggggaagtcaa
gcactcttgggcaagtgcttccgattatataaacgcaatgatcacggaaatccaaaacca
gaagtacaacgtagcaacctcactaatgttgttcttactcttcggcatctaggggttaat
gactcgacacgttttcatttcttggatcctccacctactgaagcgctaagaaaagcctca
caattattatttgcacttggtgcattaaataatgtaggtgagctaactgaggttggtgaa
cggatggcagagttccctgtggatgcaatgctgtctaaggcgatagttgcttcagatcag
tataagtgctcaaatgaggtaatttctattgttgccatgctttccgccggtgatcatgat
tccgtctttcatcatccggaggacaaacaagttgatgctgacaatgcacgaatgcatttt
cattctgggaatgtgggagatcacattgcattactcaaggtttataatgaatggaaagac
gcaaactactcagcccagtggtgccatgaaaactacatacaaattaggaccatgaaaaga
gcaagagatatacgggaccaacttgagcggctcttggagaaggtcgggattgagctgtcc
tcaaatccctttgatatagagcctataaagaaagcaattacatctggtttcttcgctcat
tctgcaaaggtgcagaaaacttcttatataccagtcaaacagccgccaaagaatctccat
atacactacagatcagggctggcaagaatgcttccgaaatgcgttttataccatgagttg
gacctcgaaaccaatcaatacatgagacaagtaacggagataaattcagagtggttgcag
gaagtagctccatactattaa
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