KEGG   Rosa chinensis (China rose): 112164510
Entry
112164510         CDS       T06020                                 
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112164510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rcn03041]
    112164510
   03036 Chromosome and associated proteins [BR:rcn03036]
    112164510
Spliceosome [BR:rcn03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    112164510
 Complex B
    112164510
 Complex C
   U2 SnRNP specific factors
    112164510
Chromosome and associated proteins [BR:rcn03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    112164510
SSDB
Motif
Pfam: PPP2R1A-like_HEAT SF3b1 TOR1L1_N HEAT HEAT_EZ HEAT_ECM29 HEAT_EF3_N Cnd1 Htt_N-HEAT_1 XMAP215_CLASP_TOG IFRD T4_baseplate
Other DBs
NCBI-GeneID: 112164510
NCBI-ProteinID: XP_024156489
LinkDB
Position
5:complement(39008102..39012339)
AA seq 1031 aa
MDPFDEKNEARLPQKRKNRWEDSPDGDDLPKKKPKTTSDWDATPKPMRRRNRWDETPMLD
APILDSDATPTLSYTATPTPKTSRWDQTPKAEAAAAAYTPGVTPFGGAGLATPTPGAFKA
ITQEENLSDEQLDAMIPSGYKIMDPPAGYKPIRTPARKLLETPRTPFYTIPVENRGQMFD
LPKELSDGVALRPEDYQFFGALMNEEENEELSAEEVKDRRIMKLLLKVKNGTPQQRKAAL
RQITEKAVEFGAGPLFDRILPLLMQQNGSDMDQERHLLVKVIDRVLYKLNVLVCPYVKKI
LTVVLPLLLDQDYYARVEGREIISKLTKAAGLANMIVAMREGIDEVEEYVRNTTARAFSV
VAYAVGIPALLPFVKAVCQSKKSWMARHTGIKIVQQIGILIGPAVLPHLKSLVETIEHGL
SDENQRVRTITALSVAALAEAAAPYGIESFDNVLKPLWQGTRTHRGKVLAAFLKAIGFVI
PLMDERYASYYTKEVMVILIREFKSPDEEMKKIVLKVVKQCVNTDGVEPEYIRHHILPEF
FSNFWIRRMALDRRNYRQLVETTVELANKVGASDVIGRIVEDLKDDSEPYRQMVVETIEK
VVVKLGASDIHDRLEELLIDGILYAFQEQTSDDANVMLSGFGTVVNSLGQRVKSYLPQIC
GIIKWRLNNKSAKVRQQAADLISRIAVVMKICQEEQLMAHLGVVLYEYLGEEYPEVLGSI
LGALKAIVNVIGMTKMTPPIKDLIPRLAPILKNRHEKVQENCIDLVGRIADRGAEFVPAR
EWMRICFGLLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTT
VAIAIVAETCAPFTVLPALMNEYRVPELNVRNGVLKSLSFIFEYIGETGKEYIYAVTPLL
EDALMDRDLVHRQTAASVVXHMALGVAGLGCEEALVHLLNYVWPNIFETSPHVINAVMEA
IEGMRVALGPAVVLNYCLQGLFHPARKVREAYWKIYNSLYIGAQDALVAAYPLLEDEEHN
VYTRPELTMFI
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggacccgtttgacgagaagaacgaggccaggctaccccagaagaggaagaatagatgg
gaagattcgccggacggtgatgatctgccgaagaaaaaacccaaaacgacgtcggattgg
gacgcgacgccgaaacctatgagaaggaggaatcggtgggacgagacaccaatgctagat
gctccgattttggattccgacgccactccaactctttcatatacagccacgccgacgccg
aaaacttcaaggtgggaccagacgcccaaggcggaggcggctgcggcggcttacacacct
ggtgtgaccccctttggcggagctgggcttgctacgccgacgccgggagctttcaaggcc
atcacgcaggaggagaatttgagtgatgaacaattggatgccatgattccgtcagggtat
aagataatggacccaccggcggggtataagccgattaggaccccggcgaggaagcttctc
gaaacgccgaggactcctttttacacgattccggtggagaatcgtggacagatgtttgat
ttgcctaaggagctgtcggatggcgtggccctgcggccggaggattaccagttctttggg
gcattgatgaatgaggaagagaatgaggagttgtctgccgaggaggtgaaagataggagg
attatgaagcttttgctcaaggttaagaacggcacgccgcagcagaggaaggcagcattg
aggcagatcactgagaaggctgttgagtttggtgccgggccgttgtttgaccgcattctg
cctttgctgatgcaacagaatggatcagacatggaccaggagaggcatcttcttgtgaag
gtaattgatagagtgctttataagttgaatgtattggtgtgtccttatgtgaagaagatt
cttactgttgttttgcctttactgcttgatcaagactattatgcgcgtgttgaagggaga
gagattatctccaagcttactaaagcagctggtttggctaatatgattgtggccatgcgt
gagggtattgatgaagttgaggaatatgtcagaaatactactgctagggctttcagtgtt
gttgcttatgctgtaggtattcctgcactcttgccgtttgtgaaagctgtgtgccagagc
aagaaatcatggatggcacgacacaccgggatcaagattgttcagcagattggcatcttg
attgggccggctgttcttccccacttgaagtcgcttgtggagactatagaacatggtctc
agtgatgaaaatcagagggtccggacaattactgctctatctgttgctgctctagctgag
gctgctgccccatacggtattgaaagctttgacaatgtattgaagccattgtggcagggt
actaggactcaccgtggtaaggttttggctgcgttcttgaaggcaattggttttgttatt
cctcttatggatgaaaggtatgcgagttactatacaaaggaagtgatggttattttaatt
cgagagttcaagtctcctgatgaagaaatgaagaaaattgtgcttaaagtggtgaaacaa
tgtgtaaatacagacggtgtagagcctgaatacataagacatcatattcttcccgagttc
ttcagtaacttttggattagaaggatggctttggatagaagaaactacaggcaactagtt
gaaacaactgtggagctagcaaacaaagtgggtgcttctgatgtaatagggagaattgtt
gaggatctcaaagatgacagtgaaccgtataggcaaatggttgtagagacaattgagaag
gtggtggtaaagttaggtgcttctgatattcatgataggttggaggagcttctaattgat
ggtattctttacgccttccaagagcagaccagtgatgatgcaaatgtgatgcttagtggg
tttggtacagttgtgaattctcttggccagagggtgaaatcgtaccttccccagatttgt
ggtatcatcaagtggcgcttgaataacaagagtgcaaaggtcagacagcaagctgcagat
cttatttcaaggattgctgtggtcatgaagatatgccaagaggaacaactgatggctcat
ctcggtgttgtcttgtatgagtatttgggtgaagagtaccctgaagttctaggatcaatt
ctgggagcattgaaggcaattgtcaatgttattggtatgacaaagatgactcctcctata
aaggatttgattcccaggttggctccaattctgaagaataggcatgagaaagttcaggag
aactgtattgaccttgttggccgcattgctgaccgcggtgctgagtttgttccagcgagg
gagtggatgaggatctgttttgggcttcttgagatgctgaaagctcataagaagggtatc
cggcgagctactgtgaacacttttgggtacattgcaaaagccattggcccacaagatgtc
ctggcaactctcctgaataatctcaaggtgcaggagcgtcagaatcgtgtttgcacgact
gtagcaattgcaatagtagctgaaacatgtgctccttttacggttctgcctgctctgatg
aatgagtaccgtgttccagagcttaatgtgcgaaatggtgttttgaaatccctctctttc
atttttgagtacattggtgaaacggggaaagaatatatatatgcagtgaccccgttgctt
gaggatgccctcatggacagagatctggttcacaggcaaactgcagcttctgttgtctag
cacatggctttaggagtagctggattgggttgtgaggaggcgttagtccacttgctgaac
tatgtctggccaaacatatttgagacatccccacatgttataaatgctgttatggaagcc
attgaagggatgagggtggctttgggtcctgctgttgttctcaattactgtctccagggg
ctgttccatcctgctaggaaggttagggaggcgtactggaagatttacaactcactctat
attggagctcaagatgctcttgtggcggcctaccctttgctggaggacgaggagcataat
gtgtatactaggccagagctgacaatgttcatatga

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