Rosa chinensis (China rose): 112164542
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Entry
112164542 CDS
T06020
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112164542
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112164542
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Complex C specific factors
112164542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
AAA_7
AAA_11
AAA_29
Motif
Other DBs
NCBI-GeneID:
112164542
NCBI-ProteinID:
XP_024156524
LinkDB
All DBs
Position
5:6641555..6648945
Genome browser
AA seq
693 aa
AA seq
DB search
MSQFWKPGAEKPRLLDDEEGGVVFFPTSSGGGYANLERQRQRLPVFRYRTAILYSVETRA
TTVVVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQSVAARVAEEMGVKLGEE
VGYTIRFEDATTQGVTMIKFLTDGVLLREMMDDPLLTKYSVVMVDEAHERSISTDILLGL
LKKIQKRRPELRLIISSATIQAKSMAAFFQSSRKRRRRPEGEELGPIMEPAVLSVEGRGF
NVQIHYVEEPVADYLRAAVSTVLLIHDQEPMGDILVFLTGQDDIDAAVQLITEETQNRRK
NSSGLMVLPLYSGLPRADQELVFSPTPRGKRKVVISTNIAETSITLEGVVYVVDSGFSKQ
RFYNPISDIENLVVAPISKASARQRTGRAGRVRPGKCYRLYTEEYFVKEMSAEGIPEIQR
SNLVSCVIQLKALGIDNILGFDWPASPSSEAMVRALEVLYSLGVVDDDAKLTSPTGFQVA
EFPLDPMISKMILSSGELGCSEEIITIAAVLSVQSIWASGWGSQKELDEAKLNFAAAEGD
HVSFLNVYKAFLQSGKSSQWCHKNFVNYQAMKKVLEIREQLRRTARRLGIDLKSCERDTV
VVRKAITYGFFANACVSEASSHDGKYKTIRGSQEVYIHPSSVLFRVNPKWVVYHSLVSTE
KQYMRNVISIDPSWLTEAAPHFYQKQRPNPMLH
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagttctggaaaccaggggcggagaagcctcgcctcctcgacgacgaagaaggc
ggcgtcgttttcttccccacctcctccggaggaggctatgcgaatctcgagaggcagagg
cagagactaccggtgttcaggtaccgcaccgccattctctactccgtcgagactcgcgcc
accaccgtcgtcgtcggcgaaaccggcagcggcaaaaccactcagattcctcagtatttg
aaagaagcaggttgggctgatggtggccgtgtaattgcttgtactcagccgagaagattg
gctgttcagtcggttgcagcacgggtggctgaagaaatgggggtcaagcttggggaggaa
gttggctacactattcgatttgaagatgctacaacacagggtgtgactatgataaagttt
ttgactgatggtgtgttactcagggaaatgatggacgatcctcttttgactaaatatagt
gttgtaatggtagatgaagctcatgaaaggtctatctccacggacattttattgggtctc
ctgaaaaagatccaaaaacgccggcctgagctgcgcctgattatctcatctgctacaatt
caagcaaagtcaatggctgctttctttcagtccagcagaaaaaggcgccgcagaccggaa
ggagaagagcttggaccaattatggagcctgcagtcctgtcagttgagggtagagggttt
aatgtacaaattcattacgtggaggagcctgttgccgactatcttcgggctgcagtctca
actgtattattgatacatgaccaggaaccaatgggagatattctggtatttcttactggt
caagatgatatcgatgctgctgtccaacttattacggaagagacccaaaaccgtagaaag
aactcatcaggactgatggttttgcctctctattcgggacttccacgtgctgaccaggag
ctggtgttcagtcctactcccagagggaaaaggaaagtagttatatcaaccaacatagcc
gagacatcaataactttagagggcgtggtctatgttgttgacagtgggttctcaaagcaa
cggttctataacccgatatcagatattgaaaatctggtagtggcaccaatatccaaggca
tctgctaggcaaaggaccggtagagctggaagagttcggcctgggaaatgttacaggctg
tatacagaagagtattttgtaaaggaaatgtctgctgaggggattccagagatacaaaga
tcaaatcttgtttcctgtgtgatccagttaaaagccttgggaatagataatatattgggc
tttgattggccagcatctccatcttctgaagcaatggttcgagcacttgaagtgctttat
tcacttggggtcgtggatgatgatgctaaacttacttcaccaactggatttcaagttgct
gagtttccattggatccaatgatctcaaagatgatcttatcatctggtgaactggggtgt
tcagaagagattattactattgcggctgttctctctgttcaatctatctgggcttctggt
tggggatcacaaaaggaacttgatgaagccaagttgaattttgctgcagctgagggtgac
catgtgagtttcctaaatgtctacaaagcatttcttcagtctggtaaatcttcacagtgg
tgtcataagaactttgtaaactaccaagccatgaaaaaggttcttgaaataagggaacaa
ctcagaagaacagctcgaagattaggcattgacttgaaatcttgtgaaagagatacagtg
gtagtgagaaaggccattacttatggatttttcgctaatgcgtgtgtttcagaagcatca
agtcacgatggaaagtacaaaactatcagaggttctcaagaagtttatattcacccctca
tctgtgctattcagagttaatcccaagtgggtggtttaccattctcttgtctcaactgaa
aagcaatacatgcggaatgtcatttcgatagatccttcttggctcacagaggcagctcca
catttttaccaaaagcagcgacccaatcctatgcttcactag
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