Rosa chinensis (China rose): 112164570
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Entry
112164570 CDS
T06020
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112164570
03036 Chromosome and associated proteins [BR:
rcn03036
]
112164570
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112164570
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
112164570
SLIK complex
112164570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
COG4_m
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
112164570
NCBI-ProteinID:
XP_024156567
LinkDB
All DBs
Position
5:complement(51470661..51488178)
Genome browser
AA seq
1749 aa
AA seq
DB search
MAFFRNYSNETVSHSFLEDQSQGPRDDRIHSSSGNADAHGMSCDKEFDMNMDVKYQSEDE
QDGPSRLQNEAAADEGAGAGVSNSQSSGRRTTVAGKWGSTFWKDCQPMCPQGGSDSGQDT
KSGSEYRNAVGSEDNSSDVREDRLDSEDDGRPKVRKGQRGHSDIPADEMLSDEYYEQDGE
EQSDSMHYRGFHHSVGSTSRPQSKPAPVTNHMLRTSKLSNNNGNYDDGEDDNENIDAADA
DYEEEDEDEDDPDDADFEPDYGVPSGRTAKKQDKDWNDQDSDEDNDSDDELDVSDEDNSF
YAKKPKGRHRGKGAHTVKLKRERKSYHGSSRQRRRKSSFDDDESSAEDSESDSDEGFKST
RRKGAHIRKSNGRTTNVSGRNGEVRTSTRSVRKVSYVESEGSDEIDEGKKKKSQKEEIEE
EDGDYIERVLWHQPKGMAEDAIRNNRSTEPLLLSHLFDSEPDWSNTEFLIKWKGLSHLHC
QWKSFSELQSLSGFKKVLNYTKKVMEDARYRKTISREEIEVHDVSREMDLDLIKQNSQVE
RIIADRIKQDGSGDVVPEYLVKWQGLSYAEATWEKDVDIAFAQDAIDEFKAREAAMAVQG
KMVDLQRKKSKGSLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGK
TVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPELNVIVYVGTRASREVCQ
QYEFNNEKIVGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTL
LEFSTKNKLLITGTPLQNSVEELWALLHFLDPHKFNNKDDFVQNYKNLSSFNEIELANLH
MELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVS
LLNIVVELKKCCNHPFLFESADHGYGGDSSSKDGSKLERVILSSGKLVILDKLLVRLHET
KHRVLIFSQMVRMLDILAEYMSHRGFQFQRLDGSTKADLRHQAMEHFNAPGSEDFCFLLS
TRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDIL
ERAKKKMVLDHLVIQKLNAEGRLEKKETKKGTLFDKNELSAILRFGAEELFKEEKNEEES
KKGLLSMDIDEILERAEKVEEKETTEDGHELLSAFKVANFGTAEDDGSFWSRWIKPEAVS
QAEDALAPRATRNTKSYAEAAQPDRSNKRKKKESEPQERVQKRRKPDHSVPSAPMIDGAS
AQVRGWSSGNVSKRDALRFSRAVMKFGNESQIGLIVEEVGGAIAAASPEAQVELFNALID
GCREAVEVGSLDQKGPLLDFFGVPVKASDLVNRVQELQLLAKRIVRYEDPIGQFRVLMYL
KPSNWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPR
APNLRDRANALLEMELAALGGKSANAKVGRKASKERENPVPVSVSRTGVKKGKAGSSRLN
VQMNKDKPLKPQRVEPLVKEEGEMSDDEEVYEKFKEEKWMEWCEEMMTSEIKTLNRLHRL
QTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLDNEEEPYGQDRMTTRLWNFVSTFSNLSG
ERLHQIYAKLKQEQDEEPGPSHVNGSASGPFGRDSDPTSFSHLAERQRGYKSVNNQTFEP
LKGFDTAKFEAWKRRRRGETDSPSQRPLSNGSRPADPNSMGILGAGPSENRRSVNEKPYK
TRQTGLPPR
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atggcctttttcaggaactactctaatgaaacagtttcacatagtttcctggaagaccag
agccagggaccacgtgatgatagaattcacagctcctcagggaatgcggatgcacatgga
atgtcttgtgataaggagtttgatatgaatatggatgtgaagtatcaaagtgaagatgaa
caagatggtcctagtaggttgcaaaatgaggcagctgctgatgagggtgccggtgcagga
gtgtccaattcccagtcttctgggaggaggacgactgtggctggaaaatggggttcaacc
ttttggaaggattgtcaacctatgtgccctcagggtggatccgattctggacaggacact
aaaagtgggtctgagtacagaaacgctgttggatctgaagataattcttcggatgtcagg
gaagatagattagattctgaagatgatggcagacctaaagtacgaaagggacaacggggc
cattctgatatacctgcagatgaaatgttgtctgatgaatattatgagcaggatggggaa
gaacagagtgactcaatgcattatagagggtttcatcattcagttgggtccacttccagg
ccacaatcaaagccagcccctgtcaccaatcacatgcttaggacttctaaactttcaaat
aataatggaaattatgatgatggcgaagatgacaatgaaaatattgatgctgctgatgct
gattacgaagaagaggatgaagatgaagatgatcctgatgatgcagattttgaacctgat
tatggtgttccaagtggtcgcactgcaaagaagcaggataaagattggaatgatcaagat
tctgatgaagataatgacagtgatgatgaacttgacgtctcagatgaagataattctttt
tatgcgaagaaaccaaagggtaggcatcgtggtaaaggtgcacatactgttaaacttaaa
agagaacgcaaatcataccatggatctagtcgacaaagaagaagaaagtcatcatttgat
gatgatgagtcctcagcagaggactctgagagtgacagtgatgagggttttaaaagcacg
agaaggaaaggtgcacatatccgcaaaagtaatggccggacaacaaatgtctctggacga
aatggtgaagtacgaacttctactaggtctgttcgaaaggtgtcatatgttgaaagtgaa
ggaagtgatgaaattgatgaaggcaagaaaaagaagtcgcaaaaggaggagattgaggag
gaggatggtgactatattgaaagggtgctctggcatcaaccaaagggcatggctgaagat
gctattcggaataatagatccacggagcctctgttgttaagtcacttgtttgactctgag
ccagattggagtaatacagaattcttgatcaaatggaaaggcttgtcacatttgcactgc
cagtggaaatcattttctgagctacaaagtcttagcggttttaagaaggttttaaactac
actaaaaaggtgatggaggatgccaggtacaggaagaccatctcacgtgaagagattgag
gttcatgacgtgagcagggaaatggacttggatctcatcaagcaaaacagtcaggtcgag
agaataattgcagaccgcatcaagcaagatggctcaggtgatgtagtacctgagtatctt
gtcaagtggcaaggattgtcttatgctgaagcgacatgggagaaggacgttgatattgca
tttgcacaagatgctattgatgagttcaaggctcgtgaggctgcaatggctgtacaaggg
aaaatggtcgatctccaacgcaagaaaagcaaaggaagtctaaggaagcttgatgaacag
cctgaatggttgaaaggaggaaagcttcgtgattatcagcttgagggtttgaattttctt
gttaatagttggagaaatgataccaatgtcattttagctgatgaaatgggtcttggcaaa
actgttcaatcagtttcgatgcttggttttttacagaatgctcaacagattcatgggcca
tttctcgttgttgtaccattatctactttgtcaaattgggcaaaagaatttaggaaatgg
cttcctgagctgaatgttattgtgtatgttggtacccgtgcaagccgagaggtttgtcag
cagtatgaattcaataatgagaaaatagttggccggcctataaaatttaatgcactgttg
acaacatatgaagtggttctaaaggataaggctgttctttccaagatcaagtggaattat
ctgatggtggatgaagctcataggctaaagaacagtgaggctcagctgtacacaactctc
ttggaatttagcacaaaaaacaagttgcttataaccggaaccccattgcagaacagtgtg
gaagagttatgggccctgcttcacttcctagatccccacaagttcaataacaaagatgat
tttgttcagaactacaagaatctcagttcatttaatgagattgagcttgctaatcttcac
atggaactgaggcctcacattctccgaagagttattaaggatgttgaaaagtctttacct
ccaaaaattgaacgaattcttagggttgaaatgtctcctcttcagaaacagtactacaag
tggattttggagcgcaacttccataacttgaacaaaggagttcgtgggaatcaggtttca
ttgttgaatattgtagtagagttgaagaaatgctgtaatcatcccttcctttttgaaagt
gctgaccatggttatggtggggactcaagcagtaaagatggcagtaaattggagagagtt
attttaagcagtgggaagttggttatacttgataagcttcttgttagattacatgagacg
aaacaccgtgttctcatcttttcccagatggtaagaatgttggacatactagccgagtat
atgtcgcatagagggtttcaatttcagcgacttgatggaagtacaaaggctgatttacgt
caccaggctatggaacatttcaatgcacctggtagtgaagatttttgcttccttctttca
acacgggcaggtggcttgggaatcaaccttgccacggcggacacggttataatatttgat
tcggattggaatcctcaaaatgacttgcaggcaatgagtagagctcacagaattgggcaa
caggaagttgtcaacatctatagatttgtaacaagcaagagtgttgaggaagatatcttg
gagcgagctaagaaaaagatggtgctagaccatttggtgattcaaaagttaaacgcagag
ggaagattggagaagaaagaaaccaaaaaggggacattatttgataaaaatgagctatct
gctatcttaagatttggagctgaggaactgtttaaagaagagaaaaatgaagaagaaagc
aagaaaggactattaagtatggatattgatgagattcttgagagggcagaaaaggttgaa
gagaaggaaactacagaggatggccatgaattgctgagtgcttttaaggttgcaaatttt
ggtactgctgaagatgatgggagtttttggagtcgttggataaagccagaagcagtgtcc
caagctgaagatgctcttgctcctcgcgctacaaggaataccaagagctatgcagaagct
gctcagcctgataggagcaataaaaggaaaaagaaagaatctgagcctcaggaaagagtc
cagaaaaggcgcaaaccagatcattcagttccatcagcaccaatgatcgacggagcatct
gctcaagtaagaggatggtcatctggaaatgtgtctaaacgagatgcattgcggttttcc
cgtgcggttatgaagtttgggaatgagagccaaattggcttaatagttgaggaggttggt
ggcgcaattgcagcagcttcacctgaagcccaggttgagcttttcaatgcattgatcgat
ggatgcagagaagcagtggaagtggggagtttggaccagaagggacccttgcttgatttt
tttggtgtccctgtgaaggctagtgatctggtcaaccgcgttcaagaacttcagctcctg
gcaaagcgcattgttcgatatgaagaccccattggacagttccgtgtcctgatgtacctc
aaaccttcaaactggtcaaaaggttgtggctggaatcagattgatgatgcaaggttactt
cttggaatatactaccatgggtttggtaattgggaaaagataagattagatgaaaggctt
ggccttatgaagaagattgctcctgtagaacttcagcaccatgaaacattcttaccccgt
gctccaaatttgagagaccgtgctaatgctcttttggaaatggaacttgcagctcttggg
ggaaagagcgcaaatgctaaagttggtcgtaaggcttccaaagagagggaaaatcctgtc
cctgtttctgtgtctcgcactggggtcaagaaaggaaaagcaggttcttctagacttaat
gtccaaatgaacaaggacaaaccgctgaaaccccagagagttgaacctttagtgaaagaa
gagggtgaaatgtctgacgatgaagaagtatatgagaagtttaaggaagagaaatggatg
gaatggtgtgaagagatgatgactagtgaaattaaaaccctgaatcggcttcatcgtttg
cagacgactagtgccaatcttccaaaggagaaggtgctttcaaaaattcgaaattattta
cagcttcttggacgaaggatagaccaaattgttttggacaatgaggaggaaccatatgga
caggataggatgaccacgcgcttgtggaactttgtttctacattttcaaacctgtctgga
gagagacttcaccaaatatatgcaaaacttaaacaagagcaggatgaggaacctggtcct
tcccacgtcaatggctctgcatctggtccttttggcagagacagtgaccctacttccttc
tcccatcttgctgagaggcaaagagggtacaaaagtgttaataaccaaacatttgaacct
ctgaagggttttgatacagctaaatttgaagcgtggaaacgaaggagaagaggggagact
gatagtccatctcaaagacctttgagtaatggttctcggccagctgatccaaactcgatg
ggaattcttggtgcaggaccatctgaaaatagacgctctgtcaatgaaaagccttataag
actcgtcaaactggtttaccaccaagataa
DBGET
integrated database retrieval system
