Rosa chinensis (China rose): 112164646
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Entry
112164646 CDS
T06020
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03030
DNA replication
rcn03410
Base excision repair
rcn03420
Nucleotide excision repair
rcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112164646
03410 Base excision repair
112164646
03420 Nucleotide excision repair
112164646
03430 Mismatch repair
112164646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcn03032
]
112164646
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112164646
DNA replication proteins [BR:
rcn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
112164646
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
112164646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
PTCB-BRCT
AAA_22
AAA_30
Rad17
AAA_18
AAA_19
BRCT_2
nSTAND3
AAA_16
Sigma54_activ_2
PTPRCAP
AAA_assoc_2
RuvB_N
AAA_5
DNAX_ATPase_lid
AAA_24
Zeta_toxin
AAA_14
AAA_2
RNA_helicase
Gp44_lid
NTPase_1
AAA_28
AAA_17
Motif
Other DBs
NCBI-GeneID:
112164646
NCBI-ProteinID:
XP_024156679
LinkDB
All DBs
Position
5:52006783..52019892
Genome browser
AA seq
972 aa
AA seq
DB search
MSQADIRKWFMKSHDKANASKPAPAPAPAASALPKQSTDPPQQQNVHVGEENSGRRKTSK
YFPPNKPKPNEEKETVQVPAKRKTRPDPVESSRPSPAKKVQKVADDDDDDDFVLPQSKKK
EATPSKKLKNASGMGIPQNLTSADESDDDETKASRKSGGRGRGGRGSSSAAPAAGRGRGA
GRGGFMNFGERKDPPHKGEKDVPEGDPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRI
TGSVSKKTSYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDKIRASIRAEAPVKEEKKPVD
SARESSLANKSPKKVALKGSPDCTSSSLACRVSHKQSPSDASLARRKEQTTEHSALTWTE
KYRPKVPNDIIGNQSLVKQLHDWLAHWHEQFRDTGVKKKGNKPNNTGAKKAVLLSGTPGI
GKTTSAKLVSQMLGFQAIEVNASDSRGKADSKIVKGIGGSNANSVKELVSNESLSMDRSK
HPKTVLIMDEVDGMSAGDRGGVADLIASIKSSKIPIICICNDRYSQKLKSLVNYCLLLSF
RKPTKQQMAKRLKQVANAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVIKYED
IRQRLLSSAKDEDISPFTAVDKLFGFNAGKLRMDERFDLSMSDPDLVPLLIQENYINYRA
SAAVKDDSGVERMNLIARAAESIGNGDIINVQIRKYRQWQLSQSCSLSSSIIPAALLRGQ
RETLEQGERNFNRFGGWLGKNSTLGKNLRLLEDLHFHLLASRESSSGRETLRVEYLPLLL
KRLSVPLRKLSKDEAVQEVVEFMNTYSISQDDYDTIVELSKFQGHPNPLDGVQPAVKAAL
TKAYKEGSKSRMVRVAEFVTFPGMKKAPKKRIAAILEPSDDVTGENNNDTLVLSEEENSS
DTEDLESSAVGEKLQQELQSLNKKGVQVQLDLKGATNPSAKRTPAGRGKGASSGASEKKG
GRGSGSGAKRKR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggcagatatcagaaagtggtttatgaaatcgcatgacaaggccaatgcctcc
aaaccggctccggctccggctccggctgcttctgctttgccgaaacagtctacagacccc
cctcaacaacagaatgtgcatgtaggtgaagaaaattcaggcagaaggaaaaccagcaag
tattttcctccaaataaaccaaagccgaatgaggaaaaggaaaccgttcaagttccagca
aagcgaaagactcgacctgatcctgttgaatctagcagaccctcacctgcaaaaaaagtt
cagaaagttgctgatgatgacgacgacgacgattttgttttgcctcagtctaaaaagaaa
gaagccacgcctagcaagaaactgaagaatgcatctggcatgggaattccacagaacctg
acgtctgcagatgaaagtgatgatgatgaaaccaaggcttctcgcaaatctggtggtaga
ggtcgtggtggaagaggtagttcatcagctgcaccagctgctggaagaggcagaggcgct
ggacggggtgggtttatgaattttggcgaaaggaaagatcctccacacaaaggagaaaag
gacgttcctgaaggtgatccaaactgtctagctggtttaactttcgtaataagtggtaca
cttgatagtttggaaagagaggaggcagaagatttgataaaacgccatggtggtcgtatc
actggatctgtcagcaagaaaacgagctatcttttatgtgatgaagatattgagggcagg
aaatcctcaaaagccaaagaacttgggacggctttccttactgaggatggattgtttgat
aagattcgggcatcaattcgtgctgaagcacctgtgaaagaagaaaagaaacctgtggat
agtgcacgagaatcatctttggctaataaaagccctaagaaagtagcattaaagggttca
ccagattgcactagcagctccttggcatgtagggtatcccacaaacagtcaccatcagat
gcttcccttgctaggcgcaaagagcaaactaccgagcattctgctttgacatggacagaa
aaatatagaccaaaggttccaaatgacattattggtaaccagtcactggtaaagcagctt
catgattggttggcacattggcatgagcaattccgtgatactggagttaagaaaaaaggc
aataaaccaaacaatacaggtgctaaaaaagctgtactattaagtggaacacccggaata
gggaaaacaacgtcagcaaagttagtcagtcagatgctcggtttccaggcaattgaggta
aatgcaagtgacagtcgtgggaaagctgattccaagattgtcaagggaatcggtggaagc
aatgcaaactctgttaaagagctcgtcagcaacgagtccctaagcatggatagatctaag
catcccaaaactgtgctgattatggatgaggttgatgggatgtctgctggtgatcggggt
ggagttgctgatcttattgctagcataaagagttctaaaattcccattatctgcatttgt
aatgatcgttacagtcagaaactgaaaagtcttgtgaactactgtttgcttctcagcttc
cgcaaacccactaaacaacagatggcaaagaggttgaagcaagttgcaaatgctgaagga
cttcaagtgaatgagattgctcttgaggaacttgcagaaagagttaacggagacatgcga
atggcacttaatcaattgcactatatgagtctctcgatgtctgtcataaaatatgaagat
ataaggcaacgcctactaagcagtgcaaaggatgaggatatttcaccattcacagctgtt
gacaagctgtttggtttcaatgctggaaagttgcggatggatgagcggtttgacctgagc
atgagtgatccagatctagtccctcttcttattcaggaaaattatattaactacagggca
agtgcggctgttaaggatgatagtggggttgaacgtatgaacttgatcgcccgtgccgct
gagtctattggaaatggggatattatcaatgtacaaattagaaaatatcgccaatggcag
ctttcccaaagttgttctctgtcatccagcataattccagctgctttgttgcgtgggcaa
agggagacacttgagcagggagaaagaaattttaatagatttggaggttggctaggaaag
aactcaacattaggcaaaaatctgaggctcttagaagatttgcatttccatcttcttgca
tctcgtgaatctagttcagggagggagaccctgcgagttgaataccttcccctacttctg
aaacgattgtctgtgccgctgcgtaaattgtcgaaggatgaagctgttcaggaagttgtg
gagttcatgaatacttactccattagtcaagatgactatgatactattgtagagttatca
aaatttcaggggcatccaaatccgctggatggtgttcagccagctgtaaaagcagctctt
acaaaagcatacaaagaaggaagcaaatcaaggatggtacgagttgcagagtttgtcact
ttccctggaatgaaaaaggctcctaagaagaggatcgcagctattttagaaccatctgac
gacgtaactggggagaacaataatgatactttggttctaagtgaagaagaaaattcatct
gatacagaggacttggaaagctctgctgttggggagaagctgcaacaggaacttcaaagc
ttgaataaaaaaggagtgcaagttcaattggatttgaagggtgcaacaaatccaagtgcc
aagaggacaccagctggaagaggtaaaggtgcttcttctggtgcctctgagaaaaaaggt
ggccgaggttcagggtctggtgccaaaagaaagagatga
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