Rosa chinensis (China rose): 112164756
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Entry
112164756 CDS
T06020
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112164756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rcn04121
]
112164756
03036 Chromosome and associated proteins [BR:
rcn03036
]
112164756
Enzymes [BR:
rcn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112164756
Ubiquitin system [BR:
rcn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112164756
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
112164756
Noncanonical PRC1 (PRC1.1)
112164756
Noncanonical PRC1 (PRC1.3/1.5)
112164756
Noncanonical PRC1 (PRC1.6)
112164756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_6
zf-rbx1
zf-Nse
DUF4695
zf-RING_10
zf-C3HC4_5
CLEC16A_C
ZNF512_C2HC
zf-RING_11
zf-UDP
Motif
Other DBs
NCBI-GeneID:
112164756
NCBI-ProteinID:
XP_024156817
LinkDB
All DBs
Position
5:5841851..5847705
Genome browser
AA seq
447 aa
AA seq
DB search
MPAQKRGFEAAEDGDPVENHRENGLEEPQDGEESDRSRSPEPSEDEKDDQKPEYVAVRLS
EIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD
PKYDALIAAIYPDIDKYEEEELAFHEEEKARNKQIQASIAQTFRRQSEALGRKRTTAKAT
AAAFMRSQGNYKNLRRRRNHKNTVEIQGSDDNEEANGNDGGKDSSSGDERKEPRPKRPKR
WAGARYYQPSSATANADGDDENDYEVNREVMGASVGFVRSPERLAWGKGGMRSHTRYGSS
SGANGKNARNRLSKLVDYLRNSEANDKGLDIHLLLVSFDEQRIPSLQRPYLCCSPTLSVG
QLCQYVAAQTALQPDEVQIYFLKELQAKVNPSDPTNASVSTSGVLDSSKDTLLLLRDDEL
LGEVQVRHLIRGHLLLAYQKKWNLNRG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgccggcacagaagcgtggcttcgaggccgcggaggacggtgatcctgtggagaaccac
cgcgagaacggccttgaggagccgcaggacggagaagagtccgatcggagccggagcccc
gagccgagtgaggacgagaaggacgaccagaaacccgaatacgttgcagtaagactgtca
gagattcggaaagaagtgcaatgccctatctgtctagggatcattaggaaaacaagaaca
gtgatggaatgcctgcaccgcttctgtagggaatgcattgacaagtccatgcggcttggg
aacaatgaatgccctgcatgccgtacacattgtgctagtcgtcgctctttgagagatgat
ccgaagtacgatgccttaattgcagctatttatccggatattgacaagtatgaggaagag
gaattagcttttcatgaagaagagaaggctcgcaataagcagatccaagcttccattgcc
cagacatttcgacgacaatccgaagcacttggtaggaagcgaacaacagcaaaggccact
gcagctgcatttatgagatcacagggtaactataaaaatttgaggaggagaaggaatcat
aaaaatactgttgaaattcaaggatccgatgacaatgaggaggcaaatggtaatgatgga
ggaaaagattcgtcttctggtgatgagcgcaaagaaccaagaccaaaaagacccaaaaga
tgggcaggagctcgatattatcagccttcatcagcaactgcgaatgcagatggtgatgat
gaaaatgattatgaggtgaacagagaagttatgggtgcatctgtggggtttgttcgcagt
ccagaaaggcttgcatggggtaaaggtggcatgcggagtcatacacgatatggcagttct
agtggtgcgaatggtaagaatgccaggaaccgcctttctaagttggtggattatctccgg
aactcggaagctaatgataaagggctggatatccacctcctacttgtttcttttgatgaa
caaagaatacccagtctgcagaggccttatctttgctgcagtcccaccctgtcagttgga
caactatgtcagtatgttgctgcacaaactgcactgcaacctgatgaagtgcaaatatac
tttttaaaagaactacaagccaaagttaacccatcagaccctacaaatgcttcagtttca
acatctggtgttttagattcaagcaaggatacactgcttctgttaagagacgatgaatta
ttgggagaagtccaagtacgccatctcattcgtggccatctgcttttggcgtatcagaag
aagtggaacttaaaccgtggctga
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