Rosa chinensis (China rose): 112164822
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Entry
112164822 CDS
T06020
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112164822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112164822
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
112164822
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
112164822
NCBI-ProteinID:
XP_024156916
LinkDB
All DBs
Position
5:840848..845937
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AA seq
550 aa
AA seq
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MSSDLLLKPSCGGCGSTSDLYGSNCKHMTLCCACGKTMAENKAKCYDCGAVVTRLIREYN
VRASTASEKSYFIGRFVTGLPNFSKKKSAENKWTLRKDLSDPRRSKDKDGQDQKKYKDVR
PPTDASREKHRNKPWVLEDETGQSQYNGQLEGAQSAIYYLLMLQGKEFSAIPAGSWFNFN
KVAQYKQLTLEEAEEKMNNRKKTQDGYERWMMKSGTNEPGPLREKETGVAGGKGRKKMTG
DDDEGNFSDKGEEDEEEETARKNRLGLNKKAGDDEDDEGGNEEDDLDDDSSEKGDDWEHE
EIFTDDDEAVGINPEEREEFEPEVPAPPEIKQDDDDDDNNEEEGGLSKSGKELKKLLGRS
GGLNDSDAEDDDDDDDDMDDDIALPQALAPKQKDAPKQEPVDNSPIKPGTSGSAAKANPS
SSKSAKGKRKLNGDDAKASNSAPPKKVKTENEQKSVKEEPASESSVPAKGSAASSKTGST
PSGGPTGPVSEEEIRAVLMQKSPITTRDLVNNFPGRLKSKEEKDAFAAILRKMSRIQKNN
GISYVVLREK
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacttgttgctaaagccgtcgtgcggcggatgcggatcgacttctgatttg
tacggaagcaactgtaagcacatgacgttgtgctgtgcttgcggcaaaaccatggcggag
aacaaagccaaatgctacgactgcggcgccgtcgtcactcgcttgattcgagaatataat
gtgagggcaagcactgccagcgagaagagctacttcattggtaggtttgtgacggggttg
cccaacttttcgaagaagaagagtgctgaaaataaatggactcttcgcaaggatctttcg
gatccgagaaggagtaaagataaggatggacaagatcagaagaaatataaggatgttcgc
ccgcctactgacgcctctcgggagaagcacagaaacaaaccatgggtcttggaggacgaa
actggccagtctcagtacaatggtcaactcgaaggtgcacagtcagcaatttactaccta
ttaatgttgcaaggaaaggagttttctgctattcctgctggttcgtggttcaactttaac
aaggttgcacaatataagcagcttactctagaggaagcagaagagaagatgaacaatagg
aaaaagactcaagatggatatgaaagatggatgatgaaatctggaactaatgaacctggt
ccacttcgtgagaaggaaactggtgtggctggtggtaagggacgcaaaaaaatgactggt
gatgatgatgagggaaatttctctgataaaggggaggaagatgaggaagaagagacagca
aggaaaaatagacttggtctcaacaaaaaagctggtgatgacgaggatgatgaaggtgga
aatgaagaagatgacttagatgatgatagcagtgagaagggtgatgattgggagcacgaa
gaaatattcaccgatgatgatgaagctgttggcattaatcctgaggagagagaagaattc
gaacctgaggttccagctcctccagaaattaagcaggatgatgacgatgatgataataat
gaagaggagggtgggctcagcaaatcaggaaaagagttgaagaagctacttgggcgaagt
ggtggcctgaatgattcagatgcagaggacgacgacgacgacgacgatgatatggatgat
gatattgccttgcctcaagcgctggcaccaaagcagaaggatgcacccaaacaggaacca
gttgacaacagtcctattaaacctgggacttctggatctgctgctaaagcaaacccatct
tcctccaagtcggcaaagggaaagagaaaattaaatggtgatgacgctaaagcatccaac
agtgcacctcccaagaaggtgaagactgaaaatgagcaaaaatcagtcaaagaggagcct
gcttctgaaagtagtgtgcctgcaaaaggtagtgctgcatcctcgaaaacgggttcaaca
ccatctggtggtcctacaggtcctgtatctgaggaagaaattagggcagttttgatgcaa
aagtcacccatcaccacacgtgatcttgttaataacttccccggacgactcaaatccaaa
gaggagaaggatgcttttgcagcaatcctgaggaaaatgtctaggatacagaagaacaac
gggatcagctatgttgtattgagggagaagtga
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