Rosa chinensis (China rose): 112164992
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Entry
112164992 CDS
T06020
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112164992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112164992
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112164992
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112164992
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112164992
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
112164992
NCBI-ProteinID:
XP_024157138
LinkDB
All DBs
Position
5:10969332..10974843
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AA seq
691 aa
AA seq
DB search
MEDSDGVLNFDFEGGLDATAGAGPIHTGPASNAPIQSDSLVAQSNNQASAAPQPDPNVNP
SGRKSFRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRMYGECREQDCVYKHTNE
DIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSYNYNNSNKFFQQRNG
GFPQQPDRSQPAQVPNSFNQVVIRPSAAESANVQQPQQFQQTQQQVGQTQAQSIPNGLPS
QANRAALPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAENVILIF
SVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN
PYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPEN
GGENPDIVPFEDNEEEEEEESDDEEDYQVPGGANENRGRGRGMWPPHMPLGGRGGRPMPG
MQGFPPGMMGPDAMPYGPVTPDGFVMPNPFGMGPRGFNPYGPRFSGDFNGPNSGMMFRGR
PSQPGGMFPPGPYGMMMGPGRGPFMGGMGVGGANPARGGRPGGMPPMFPPHPPPSSQNNN
RLQKRDPRGAGNDRNERYSAGSGHGKEMQAGGPDDETHYQQSSKSYQEDYGGGNNGRNDD
SESEDEAPRRSRHGEGKKKRRDAEGDATSEH
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcagatggagtcctcaacttcgacttcgagggcggcctcgacgccaccgcc
ggcgccggacccatccacaccggcccggcctccaacgccccgatccagtccgactccctc
gtcgcgcagtccaacaaccaggcctccgccgcgccacaacccgacccgaatgtcaacccc
tcgggccggaagagcttccggcaaacggtgtgtcgtcactggctccgcagcctctgtatg
aagggcgaggcttgcggcttccttcaccaatacgacaagtcgcgcatgccggtgtgccgc
ttcttccgtatgtacggcgagtgtagggagcaggattgcgtctataagcacaccaacgag
gacattaaagagtgtaatatgtacaagctaggtttttgtccaaatggtcctgattgccgg
tatagacatgcaaagcttcctggacctccaccccctgtggaagaagtccttcagaagatt
cagcatttgaattcgtacaattacaacaactcgaataagtttttccaacaacggaatggt
ggttttccccaacaacctgatagatctcagcccgcacaagtccccaattcattcaatcaa
gtggttataagaccttcagcagcagagtctgctaatgtccagcagcctcaacaatttcag
caaacacaacaacaggttggccagactcaggcacagagtattcccaatggcctgcctagt
caggcaaatagagctgcattgcccttgcctcaaggaatatctaggtattttattgttaaa
agttgcaaccgtgaaaatttggaattatccgtacaacaaggagtatgggcaactcaaagg
agcaatgaatccaaacttaatgaagctttcgactctgcagaaaatgtcattttaattttc
tcagtcaaccggactcgacatttccagggttgtgcaaagatgatgtccagaattggtggg
tctgttagtggagggaactggaaatatgcacatggaactgcacattatgggcgtaatttc
tctgtcaaatggttaaagctatgtgaattgtcctttcacaaaactcgtcacttgaggaac
ccatacaatgagaacttaccagtgaagataagcagagattgtcaagagctagagccctcc
attggtgagcagttggcatccttgctttatcttgagccagatagtgaacttatggcaatc
tccattgcagcagagtcaaaacgagaagaagaaaaggcaaagggagtcaatccagagaat
ggtggcgagaacccagacattgtcccatttgaggacaatgaagaagaggaagaggaagaa
agtgacgacgaggaagactaccaagttcctggtggagcaaatgagaacagaggaaggggc
agaggtatgtggccccctcatatgccactaggaggaagaggtggcagacctatgcctggg
atgcagggtttcccccctggaatgatgggtccagatgcaatgccatatggaccggttaca
cctgatggatttgttatgccaaatccttttggtatgggccctcggggtttcaatccatat
ggtcctaggttttccggtgattttaatgggcccaattctggcatgatgtttcgtgggcgt
ccttcacaacccggtggtatgtttccacctggtccctatgggatgatgatgggtcctgga
cgtggaccatttatgggagggatgggggttggaggtgcaaatccagcccgaggtggtcgt
ccaggtggtatgccgccaatgttccccccacacccaccaccatcatctcaaaacaataac
cggttgcagaagagagatccaaggggagctggcaatgatcgaaatgagaggtatagtgca
ggatcaggccatggcaaagagatgcaggccggtggaccagatgatgagacccattatcag
caatcatcaaaatcgtaccaggaagattatggtggtgggaacaatggtaggaatgatgac
agtgaaagtgaagatgaggcaccgaggcggtcaaggcatggggagggaaagaagaaacgg
cgagacgcggaaggagatgctacctctgagcactag
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