Rosa chinensis (China rose): 112165568
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Entry
112165568 CDS
T06020
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
KO
K14829
pre-rRNA-processing protein IPI3
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcn03009
]
112165568
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
112165568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
NBCH_WD40
Beta-prop_EML_2
EIF3I
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_IP5PC_F
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
112165568
NCBI-ProteinID:
XP_024157893
LinkDB
All DBs
Position
5:complement(23175819..23177063)
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AA seq
414 aa
AA seq
DB search
MSSSSPEIVLTSSPDGPIVAYDASSGTIVAQFTGSRSPRRGLTVVGKDFGKKYIAASHIS
PTTASGSIHLYNWWSSTAFHNLPVPEPVAPLAASFDGLYLFAGGISGSLHTLSVPSGNVL
KSLPAHNKPVTCLGVNHDESLLISGSDDGTIAIVPIFQLVGDSGCENVEDLILHKFAAHS
DSVTAIVSGTGLCYSQIISCSTDSTCKFWSLRRGTHLRTVVFPCTISGIALHPTEPEFYA
AGSDGSVHIGSFMIGSRKLVIQGNELMTLPHTHSSAVVSVVMLNEGRNLVSASEDGSVWI
WEVGVGQVIMALGNEMASISDLVSATGISYNKGHSSDVGKSSAKESAKCDDIGFSCEELI
MSMPARQMIEMEDLLKVAAKDRSRAIDTLESAIAIYEKLLELILKEAKKGTQQQ
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcttcccctgaaattgtcctcaccagctctcccgacggccccattgttgcc
tatgatgcttcctcaggcaccattgtagcacagttcactggcagccgctcgccgcgtaga
ggcctcactgttgttggaaaggattttggaaagaagtatatagctgcctcacacatatcc
ccaaccacggcttctggttcaatccacctttacaactggtggtcttcgactgcatttcac
aacctccctgtccccgaaccggttgcaccactagctgcctcatttgatggattgtacctc
tttgctggtggcatatcaggcagtttgcatacactttcagtcccatcagggaatgtgctc
aaatcactgcctgcacataacaagcctgtaacctgccttggtgtcaatcatgatgagtct
cttttgatctcaggcagtgatgatggaaccattgctattgtccctatctttcagcttgta
ggggactcaggatgcgagaacgttgaagacttgatattgcataagtttgctgctcattct
gattctgttactgccattgtttctggtacaggattatgctactcccagattatatcatgc
tcaactgattccacatgtaagttctggagtctccggcgggggactcacctgcgtacggtt
gtgtttccgtgcacgatttctgggattgcattgcaccccacagagcccgagttctatgct
gcagggtcagatggatcggtacacatagggtcctttatgattggaagcagaaaacttgtg
atccaaggcaatgaattgatgacattgcctcatacacacagcagtgcagttgtatctgtc
gtgatgctgaacgagggaaggaacttagtttcggcttcagaagatgggagtgtttggatt
tgggaagttggtgtaggtcaggtgattatggctcttggaaatgagatggcaagcattagt
gatttggtgtcagccacaggcataagttataacaaaggacatagttctgacgtgggtaaa
agtagtgccaaggaatctgcgaagtgtgatgacattgggttttcttgcgaggaactgatc
atgagtatgcctgcaaggcaaatgatagaaatggaggatttgttgaaagtggcagcaaaa
gataggagcagagccatcgatacgctagaatctgctattgcaatatatgagaagctcttg
gaactcattctcaaggaagctaagaaaggcactcaacagcagtaa
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