KEGG   Rosa chinensis (China rose): 112165932
Entry
112165932         CDS       T06020                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03013  Nucleocytoplasmic transport
rcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112165932
  09122 Translation
   03013 Nucleocytoplasmic transport
    112165932
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcn03019]
    112165932
   03041 Spliceosome [BR:rcn03041]
    112165932
Messenger RNA biogenesis [BR:rcn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     112165932
Spliceosome [BR:rcn03041]
 Complex C
  Other components
   EJC/TREX
    112165932
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112165932
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR36-Utp21_1st eIF2A WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_EML Beta-prop_HPS5 Beta-prop_NOL10_N Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_DCAF12 WD_LRWD1 Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_ELP1_1st DUF7099 Beta-prop_WDR41 TP_0598_N PAC11 Beta-prop_IFT80_2nd CFAP251_N PROPPIN Beta-prop_VPS8 Beta-prop_IFT140_2nd Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 112165932
NCBI-ProteinID: XP_040361328
LinkDB
Position
5:80794311..80797279
AA seq 321 aa
MEKTTPFKNLLSREYGVHEKEVRSVAWNFTGTKLASGSEDQTARVWHIEPHGNGNSVELK
GHRDSVEHLCWDPKHAELVATASMDKTVRLWDDRTGKCVQLAELSGLNINIAYKPDGELI
AVGDTVCLVVWKLCCNNELTILDVRTFKAIHKRKFHCEVNEIAWNTTSDILFVTTGKDEK
GVVEVLSYPSLQPLDRLMAHTAGCHCIAIDPCGRYFAVGSADALVSLWDISELLCVRTFT
KIKSAVRTISFNHSGEYLASGSTDCFIDISNVQTGRTVHQIPCGPAMNSVDWNPKSNLLA
YAGKDNINEGIVRIFGFTSTG
NT seq 966 nt   +upstreamnt  +downstreamnt
atggagaagacgacgccgttcaagaatctcctaagcagagagtacggtgtccatgagaag
gaggtgcgatcggtggcttggaacttcaccggaaccaagctcgcctcgggttctgaggat
cagaccgctagggtttggcacattgagcctcatggaaatggtaactctgttgaattgaag
gggcacagggatagtgtggagcatctgtgttgggatcccaagcatgccgagttggttgcc
actgcctctatggacaaaactgttcgtctctgggatgatcgtaccgggaagtgtgtgcag
ctagcggaacttagtggcctgaacattaacattgcatataaacctgatggcgagctcata
gcagttggtgatacggtatgcttagttgtgtggaagctctgttgtaacaacgaattgaca
attttggatgttcggacgtttaaggcaattcacaagaggaagttccattgcgaggtaaat
gaaattgcttggaacacaacaagtgatattttgttcgtgacaactggaaaggatgagaaa
ggtgttgttgaagtactatcatacccatctcttcaaccacttgacaggctcatggctcat
acagctggttgccactgcattgcaattgacccatgtggaagatattttgctgttgggagt
gccgatgccttggtcagcctatgggatatctcagagttgctctgtgtgcgaacgtttaca
aaaattaaatcggctgtgaggacaataagcttcaaccacagtggagagtatcttgcttct
ggcagtacagactgtttcattgacatatcaaatgttcaaactgggcgtacagtgcatcaa
attccatgtgggcctgccatgaacagtgttgactggaatcctaaaagcaatctacttgca
tatgctgggaaggacaacatcaatgaaggtattgtgaggatcttcggcttcacaagcacg
ggctaa

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