Rosa chinensis (China rose): 112166106
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Entry
112166106 CDS
T06020
Name
(RefSeq) uncharacterized protein LOC112166106
KO
K13217
pre-mRNA-processing factor 39
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112166106
Spliceosome [BR:
rcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112166106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_10
Motif
Other DBs
NCBI-GeneID:
112166106
NCBI-ProteinID:
XP_024158642
LinkDB
All DBs
Position
5:complement(8794435..8802411)
Genome browser
AA seq
1211 aa
AA seq
DB search
MSLSCNSVPEAEPMEPETPDEIRRASLDFDHWTSLISQIENSHPDDVEKICSVYDSFLAE
FPLCHGYWRRYAEHKMRLCSIDKVVEVFERALQAATYCVPLWVDYCVFSMSFFEDPSDIR
RLFKRGMSFVRKDYGCYTLWDKYIEFEYSQQEWSSLALIYIQALRFPTKKLHIYYASLKK
LATLFEEEMKSQSNSTVDLQSEALFDGEVPRFFGDDEISLVVKDLLDPAIGSGRSKALQR
YICIGKQLYHEACQLDEKIGTFEINIRRSYFHVKELDAGQLENWHRYLDYVEMQGDFDWA
VKLYERCLIPCANYPEFWMRYVDFVEINGGREIANYSLDRATQIFVKRVSVIHLLNAKFK
EQIGDVLGARAALLQFNAESDTHFVKNVILKANMEKRLGNFTAASTIFREALAMAAEKKQ
SHTLPILYVHFSRLTFMMTDSANAARDVLIDGIKQLPHCKVLLEELIKFAMMNGGKQHIN
VIDSVVTRAISQESGVCNGLNAKDAEDISSLFLEFVDLCGTIHEVRKVWTQHVRLFPSSI
RPSSLGQQSAFNVYDQQATFTKSLKLPREKEETSAAMTQQPSRDCTSDSMIELPLHDEEM
LLPENHTKECGQDPAYQLSDQTLPSKQFENLQERLQLTSPEVSKEQSPANAPEANISSTV
VEVNLVSQEVSDKAPENAPVAEVKQVSREVSEEATENTHVAEVKKVSWEVSEEPTENILV
VEEKKVSQEVSEEPRENIPKPKMSSVELGFQVAEGNDSIESSQENTMGSNVDRECDYKSE
QDPKPLSLESLSLNSEENTNLDLVSSTSPKSEASPETCTSNGKKLESDCNSDQGSYMHSP
RNDRSLESAGNELVNAMPIPVFSQPPANSYGDWSQINRSDKVGKDSKLGFRMQLQKSHPQ
QHVPPKKYPRTEAGHPMPASQGHPSILTPSQNQQIQQGSQQAQHHNQYQVASGHANIAAP
NSGPIPNVQAANDASSSQSLLPVQPVAPQMPQSSVSGNGQYAMQNPQAYNQMWQYYYYQQ
QQSLLQPQQHHPQQQQQLLLQQYQQQQQLQQYYVQMQQQQLLFQQQQQFQPTQQQLPLQQ
QQQLPLQQQQQSQVLKQLPLQEQQQFQQLQQQLQQFQQLQQQLPVQQQQQFPSQQQYNPQ
LQLQQQHPFYVHKHQLPLQQQSHLQEQHQINQSSIQQNYSHHQDQAQNSDIHGGTVISSL
SPHSPVEPPQK
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgagctgcaattctgtaccagaggctgagcccatggaaccagagactccagat
gaaattcgccgagcttcgctggacttcgatcactggacctcactcatttcgcagatagag
aattcccatcctgatgatgtagagaaaatatgttcagtgtatgattctttcttggccgag
tttccgttgtgccatggatattggaggaggtatgctgagcataagatgcgtttgtgctcc
attgacaaggttgttgaggtctttgaacgagctctgcaagctgcaacctactgtgttccg
ctgtgggtggactactgtgttttcagtatgtcctttttcgaagatccttccgatattcgc
agactatttaaaagagggatgtcctttgttcgaaaggactatgggtgctatactttgtgg
gacaaatacattgaatttgagtactctcagcaggaatggagttcactggccctgatttac
atccaagctcttagattccctaccaagaagttgcatatttattatgcgagtttgaagaag
ttggctaccttgtttgaagaggagatgaaaagccagagtaattctactgtggatttgcag
tcagaagctttatttgatggtgaagtacctaggttttttggagatgatgaaatttctctt
gtagtcaaagaccttctggatccagcaattggctcaggaaggtctaaagcactgcaaaga
tacatatgtattgggaaacagttgtatcacgaagcatgccagcttgatgaaaagattggt
acttttgagattaatataaggaggtcttacttccatgtaaaggagcttgatgcgggtcag
ttggagaattggcatcgctatctggactatgttgagatgcaaggggattttgattgggca
gtgaagctttacgaaaggtgcttgattccctgtgctaattaccccgagttttggatgcgt
tatgtggatttcgtggaaatcaatggaggaagagaaattgcaaactattctcttgaccga
gcaacccaaatatttgtgaagagagtgtcggtgattcatcttttgaatgccaagtttaag
gagcaaataggagatgtacttggtgcccgtgcggctcttcttcaatttaatgcagagtca
gatacacacttcgttaagaatgttatcttaaaggctaatatggaaaaacgtttgggaaat
ttcacagcagcttccactatattcagagaagctctagcaatggctgcagagaagaaacag
tcgcatactcttcctattctatatgttcatttctctcgccttacattcatgatgactgat
agtgcaaatgctgcacgagatgtcttgatagatggcatcaaacaattgcctcactgcaaa
gtacttctagaggagttgataaagtttgcaatgatgaatggagggaagcagcacataaat
gtgatagactctgttgtaacccgtgctatatctcaggaatcaggagtatgcaatggtctg
aatgcaaaagatgctgaggatatttcaagcttatttttagagtttgttgacctctgtgga
accatccatgaagtaagaaaggtgtggactcagcatgtacgattgttcccttcttccatt
aggccatcttccttgggtcagcagtctgcctttaatgtttatgatcagcaagctacattc
acaaagtctttgaaattgcctagagaaaaagaggaaacttctgctgctatgactcagcag
ccatctagagattgtacttctgactccatgattgagctcccgttgcatgatgaagaaatg
ttattgccagaaaatcatactaaagagtgtggccaggatcccgcataccagctatcagac
cagacattgccatcaaaacaatttgaaaatctacaggaaagattgcagctgacatctccg
gaagtttcaaaagagcagtccccagctaatgcaccagaagcaaatatatcctccaccgtg
gtagaagtgaatctggtatctcaggaagtatctgacaaggccccagaaaatgcccctgta
gcagaagtgaaacaggtatcccgggaagtttctgaagaggccacagaaaatacccatgta
gcagaagtgaaaaaggtatcttgggaagtttctgaggagcccacagaaaatatccttgta
gtagaagagaaaaaagtgtctcaggaagtttctgaggagcccagagaaaacattcctaaa
ccaaagatgtcgtctgtagaattaggatttcaagttgctgaaggaaatgattctatagaa
tcttcacaagaaaacaccatgggaagcaatgttgatcgagagtgtgactataagagtgaa
caagacccaaagccactgtccttggagagtctttctttgaattccgaggaaaatacaaat
ttggatttagtatcctccacttctcccaagtctgaagcttctccagaaacctgtacttca
aatggaaagaagctagagagtgattgcaactctgatcaaggctcttatatgcacagccca
cgaaatgatagatcgttagaatcagctggaaatgaattagtcaatgctatgcctatcccg
gtgttttctcagccacctgcaaatagttatggagactggagtcaaattaatcgttctgat
aaagttggtaaagattccaaattgggctttcggatgcagttacaaaaatcacatccacag
cagcatgttcctccaaagaaatacccgcgaactgaagcaggtcatccaatgcctgcaagt
caaggtcacccctctatattaacaccttcacaaaaccaacaaattcagcaaggcagccag
caggcccagcatcacaatcagtatcaggtagcaagtggtcatgctaatatagcagcacct
aattccgggcctataccaaatgtacaagccgccaatgatgcctcttcatctcagtctcta
ttgcctgtccaacctgttgctccacagatgcctcagtcatcagtatcaggcaatgggcag
tatgcgatgcagaatcctcaagcatataatcagatgtggcaatattattactaccagcag
cagcaatcccttctgcagccacagcagcatcatccccagcagcagcagcagttgttattg
caacagtatcagcagcagcagcaacttcaacaatattatgttcagatgcaacagcaacaa
cttcttttccaacaacagcagcaatttcaaccaacacagcaacaacttcctttgcaacaa
cagcaacaacttcctttgcaacaacaacagcaatctcaagtactaaagcagcttcctttg
caagagcagcagcaatttcagcaactacagcaacaacttcagcaatttcaacaactgcag
caacaacttcctgtgcaacaacaacaacaatttccgtcgcaacaacaatacaatccgcaa
ttgcaattacaacaacagcatccattctatgtgcataagcatcaactgccactccaacaa
caatcacatctacaggaacaacatcaaatcaatcagtcatcaattcagcagaactactca
caccatcaggatcaagcacaaaattcagatattcatggtgggacggtcatatcctcctta
tctcctcacagcccagtagaacctccccagaagtga
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