Rosa chinensis (China rose): 112166138
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Entry
112166138 CDS
T06020
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03420
Nucleotide excision repair
rcn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112166138
09124 Replication and repair
03420 Nucleotide excision repair
112166138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rcn04121
]
112166138
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112166138
Ubiquitin system [BR:
rcn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
112166138
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
112166138
TCR (transcription coupled repair) factors
Cul4-CSA complex
112166138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
112166138
NCBI-ProteinID:
XP_040362634
LinkDB
All DBs
Position
5:complement(10633732..10650695)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEILLLTPLGLQPVLDVPIYG
RIATLKLFRPHGEAQDFLFIATERYKFCVLQWDVETQELITKAMGDVSDRIGRPTDSGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAELLIPVPPPLCGVLIIGEETIVYC
SANAFKAIPIRPSITRAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAFVYIGSSYGDSQLIKLTLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPHDFFLVVS
FISETRILAMNMEDELEETEIQGFSSQVQTLFCHDAVFNQLVQVTSSSVRLVSSTSRDLK
NEWHAPAGYSINVATANATQVLLATGGKHLVYLEIVDGVLIEKKYVQLDFEISCLDINPI
GENPNYSQLAAVGMWTDISVQIYSLPDLNRITKEHLGGEIIPRSVLLCTFEGISYLLCAL
GDGHLLNFTLNTTTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAICSVKNNQTGAEDSETHFIRLLDDQSFDLVTYYQLDAFEYACSILSCSFSDD
SNVYYCVGTAYVLPEENEPTKGRILVFLVEDGKLQLIAEKETKGSVYSLNAFNGKLLAAI
NQKIQLYKWTLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDVYLGAENFYNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPQEHYSFLEKLQTNLRKV
IKGVGGLSHEQWRSFCNEKKTSDTKNFLDGDLIESFLDLSRGKMDEISKQMSVPVEELCK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtctggaactacgtcgtcacggcccacaagcccaccaacgtcacccattcctgc
gtcggcaatttcaccggccctcaggagctcaatctcatcattgcgaaatgcacacggatt
gaaattcttctacttactcctctgggtttgcagcctgtcttggatgtgccgatatatgga
cgaattgcaacccttaaactttttcggccacatggtgaagcccaggattttctgtttatt
gcaacagaaagatacaagttttgtgtccttcagtgggatgttgaaacgcaggagcttatt
accaaggcaatgggtgatgtctcagatcgtataggtcgtcctacagacagcggtcagatt
ggtataatagatccagattgcagattaattggacttcatttgtatgatggcttgtttaag
gttattcctttcgacaataaagggcagctgaaggaagcatttaacattaggcttgaggaa
cttcaagttttagatatcaagtttctttatggttgttcaaaacccacaattgtagttctt
taccaggataacaaggatgcccgccatgtcaaaacatatgaggttgctctgaaggataaa
gattttgtcgagggtccttggtcacagaacaaccttgacaatggggctgagttgttaata
ccagttcctccaccactatgcggtgttctaattattggagaggaaacaattgtttactgc
agtgccaatgcatttaaagcaatccccataagaccgtccatcacaagagcctatggaaga
gtggatgcagatggttctaggtatctacttggtgatcatgctgggctacttcacctactt
gttataacccatgagaaagaaaaggtgactggactcaagattgagctcttgggtgaaaca
tcaattgcatctacaatctcttatcttgataatgcattcgtctatattggatcaagctat
ggggactcacagcttataaagctgactctacagccggatgcaaaaggttcatatgtcgaa
gttttggaaaggtatgtcaacttggggccaatagttgacttctgtgtggttgatcttgag
agacaaggccaaggccaagtagtaacttgctctggtgcttacaaagatggttctcttcgt
gttgttcgaaatggaattggaatcaatgaacaggcatcagttgagcttcaaggtatcaag
ggaatgtggtcattaagatcgtccactgatgatccacatgacttctttctggttgttagc
tttatcagtgagacacgtattttggcaatgaatatggaggatgagctggaagaaaccgag
atacagggcttctcttctcaagtgcaaactttattttgccatgatgctgtcttcaatcaa
cttgtgcaggtcacttcaagctcggtaaggctagtcagttctacatctagggatctaaag
aatgagtggcatgctccagcaggctattcgattaatgtagcaacagctaatgccacccag
gttttattggcaactggaggaaagcatttagtttatttagaaattgttgacggggtcttg
atagagaagaagtatgtacagttggactttgagatctcatgccttgacataaaccccata
ggtgaaaatcctaattatagtcagctagcagctgttgggatgtggacagatataagtgtg
caaatatactctcttcctgatctgaaccgcatcacaaaggagcatttgggaggagagatc
atacctcgttctgttcttctctgtacttttgaagggatatcctatctgttatgtgctctt
ggtgatggacacctcttaaactttacactgaacacaactactggcgaattaacagacagg
aagaaagtctctcttgggacgcagcccattacactccgtactttctcatctaagaatact
actcatgtgtttgctgcatcggatagaccaactgtcatctacagtagtaacaagaaactg
ctttacagcaatgtaaatttgaaagaagtcagccatatgtgcccattcaactctgctgcc
tttccagacagccttgcgattgctaaagaaggtgaacttaccattggcacaattgatgac
atccagaagcttcatatccgttctattcctctaggggagcatgcacgccgcatctgccat
caggagcagtcgaggacctttgcaatatgtagtgtaaaaaataatcagactggtgcagag
gattctgaaacacacttcatccgtttgttagatgaccaaagttttgacctcgtgacgtat
tatcaactcgatgctttcgagtatgcttgttccatacttagctgttccttctcagatgat
agtaatgtatattactgtgttgggactgcatatgttctgccagaagaaaatgagccgacc
aagggtcgcattctggttttcctggtcgaagatgggaagctgcagctcattgctgaaaag
gaaactaagggatctgtttactctttgaatgctttcaatggaaaattacttgctgccatc
aatcaaaagatacagttatacaagtggacactccgggatgatggtactcgtgagctgcag
tctgaatgtggacatcatggtcacatacttgccctctacgtacaaactcgtggagacttc
attgttgttggtgatttaatgaagtcgatttcgttactaatctataagcacgaggaaggt
gccatcgaggagcgagcccgagactacaacgcaaattggatgtccgctgtagagatcctt
gatgatgatgtttaccttggcgctgaaaatttttacaacctctttactgttaggaaaaat
agtgaaggtgcgactgatgaggaacggggccgtcttgaggttgttggagagtatcacctt
ggggaatttgtcaatcggtttcggcatggttctcttgtcatgcgcttgccagattctgat
gtgggccagattcctactgtgatatttggcactgttaatggcgtaattggagttattgct
tcacttcctcaagaacattactcctttctagagaagcttcagacgaacttgaggaaggtg
ataaagggtgttggaggattgagccatgagcagtggagatcattctgcaatgagaagaag
acctcagacaccaaaaatttcttggatggggatcttattgagtcattccttgatctcagc
cgtgggaaaatggatgaaatttcaaaacaaatgagtgttccagtggaggagctctgcaag
agagtagaagagctgacaaggttgcactga
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