Rosa chinensis (China rose): 112166312
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Entry
112166312 CDS
T06020
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112166312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rcn03036
]
112166312
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
112166312
SWR1 complex
112166312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
ETC_C1_NDUFA5
Motif
Other DBs
NCBI-GeneID:
112166312
NCBI-ProteinID:
XP_024158885
LinkDB
All DBs
Position
5:19532572..19545191
Genome browser
AA seq
2119 aa
AA seq
DB search
MASKGPRPKLDHEPRPKRHKALEVANEPRRPKAHWDHVLEEMIWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGEKKMKEEEQRMKKVALNISKDVKKFWLKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLADKPVQQCSTQDQLSIEGTAVGENDISKSAE
LNVEHQSDTADGDDDYNMQSDDGSGDDENTIEEDEALFTKEERREELAALQNEVDVPLEE
LLKQYARKKVNTESSQEKDEDDVAEMTSSGEDDGISPEKGEDDTEMTSVGKDHSMSSEKG
EDGAEVMSVGEDHDMCHKMGEVGAEMTSLSEDHGEQNYLLIASKTDRSSPDVFTGRRCVG
SNGVTISETHSSEIKIGEAKNISEASLQSAKGNMPYDFDDEHEDGDFILAAGEEKDDETT
ILEEEELAKADTNHPMDEIALLQKESEIPLEELLARYKKDLSGDEVADGESEYGSALSEG
FTDSPSLEDSELKQHVSINEDVDSGEHQPALDSPTEEHRASEGGSDSENRIEDAAAAARS
AQPTGNTFSTTKVRTKFPFLLKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMT
IALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWL
KPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILL
TGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPISGMVEGQEKVNKEVLDRLHNVL
RPFILRRLKRDVEKQLPMKHEHVIYCRLSRRQRNLYEDFIASSETQATLASTNFFGMISI
IMQLRKVCNHPDLFEGRPIVSSFDMNGIYMQLSSSICSMLSPGPFSVVDLKGLGFLFTHL
DFSMSSWESDEVKALATPSSLIKERVTRIHLEDIGGFKHRKHHKKMHGMNIFEDIQKALM
EERLRQAKEHAAAVAWWNSLRSDRKPIYSTSLRDLVTVRHPVVDIAHHKANPVSYMYSSK
LADIVLSPVERFQKTIDLVESFVFAIPAARAAPPVCWCSKSESSVFLQPTYKQKCSEVLS
PLLSPFRPAIVRRQVYFPDRRLIQFDCGKLQQLAVLLRKLKSEGHRALIFTQMTKMLDVL
EAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIF
YDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRTLDNLVIQSGD
YNTEFFKKLDPMELFSGHRALPIKNMQKEKNHNTTEVSLSNVDLEAALKHAEDEADYMAL
KKVEQEEAVDNQEFTEEAIVRLEDDELVNEDDMKVDEPTDQGALMMMSSNKDSGMMLNGS
DPNEERALTGACREDDVDMMADVKQMAAAAAGQEISSFGNQLRPIDHYAIRFLELWDPII
DKTAAESQVRFEEREWELDRIEKYKEEMEAEIDEDEEPLVYETWDAEFATEAYRQQVEAL
TQHQLMEELEYEAKEKEDEADENLDSLRYGMPSDPKPKHKKKSKKAKFKSLKKRSLASEL
EPVKGELQVEPMFIDEDYLSNDVFSYSDIESPHSSVQKKRKKAESKPAGEDKISKKKSKK
LKKSHLEISTSEFDTSVSSVQHVEASELKPCESVVEFEHKPISRTKMGGKISITAMPVKR
VLMIKPEKLKKGNIWSRDCIPSPDFWLSQEDAILCAVVHEYGPYWSLVSETLYGMTAGGF
YRGRYRHPIHCCERFRELIQRYVFSAPDNPNYEKVNNIGSGKALLRVTEENIRMLLNVAA
EQPNTEYLIQKHFIALLSSVWKMASHKDGRQNLPSSGNGVYFGRNFFSSSNQISRTSVKE
NTGTMKFTHFGQGARLVAAALNDASSRRGDECVISPNPRKKSSTDAEQLDITLEFQAQKD
DSTDPFPSVINLSISDIGPPSENKATEPYLLRDSCNDYCKSTSDANVAENRFRNATRACD
EDTMGWASSTFPTYDVRSRSVSKLPSSGKHKLVFSDPVRPSKSKFRKNAVEHGEMRHFLA
EHVFPPLPIAAPLNPSPRFDLNLPVNEDIETGDMESTSHSQVVEPSFEESFGVLPHEYVP
ELLSGLDDCSLLPEYDDIA
NT seq
6360 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaggtccaaggccgaagctcgatcacgaacccaggcccaagcgccacaag
gcccttgaagttgcaaatgaacctcgacggccaaaagctcattgggaccatgttttagaa
gagatgatctggctatcaaaggactttgagtcggagagaaaatggaaattggctcaggca
aagaaggttgctttacgagccagcaaaggcatgctagatcaggctacaaggggagaaaag
aaaatgaaggaagaagagcaacggatgaaaaaagttgcacttaatatttcaaaggatgtg
aagaaattctggctgaaaatagaaaaactggtgctttacaaacatcagatggagcttgat
gagaaaaagaaaaaggcgcttgataaacagcttgagttccttctaggtcaaactgagagg
tactcaacaatgttggcagaaaatcttgcggacaagcctgtgcagcaatgttccacacaa
gatcaactgagtattgaaggcacagctgtgggcgaaaatgatattagcaaatcagcagaa
ttgaatgtcgaacatcaatcagatacagcagatggtgatgatgattataatatgcaatct
gatgacggatcaggagatgatgaaaacacgattgaggaagatgaagctctttttactaaa
gaagaaagacgggaagaattggctgctttacagaatgaagtggatgttccactcgaggag
ctactcaaacaatatgctagaaagaaagttaacacagaaagtagtcaagaaaaggatgaa
gatgatgttgcagagatgacttcttctggggaagatgatggtatatctcctgaaaagggt
gaagatgacactgaaatgacctcagtggggaaagatcatagtatgagttcagaaaagggt
gaagatggtgcagaagtcatgtctgtgggggaagatcatgatatgtgtcataaaatgggt
gaagttggcgcagaaatgacctcattgagtgaagatcatggtgaacaaaactatcttctt
atagccagtaagactgatagaagcagcccagatgtttttaccggtcgtcgttgtgttgga
agtaatggtgtgactatttcagaaacccattcatccgaaattaagattggtgaagccaaa
aatatttcagaagcgtctctgcagtctgccaaaggaaatatgccatatgattttgatgat
gaacatgaggatggtgacttcattcttgctgctggagaagaaaaggatgatgagacaacc
atattagaggaggaggaattggcaaaagcagataccaatcatcccatggatgagattgca
ttactgcagaaggagagtgaaataccgttagaggaattgcttgcaaggtataaaaaggat
ttgagcggtgatgaagttgcagatggggaatctgaatatggttctgctttatcagaggga
tttacggattctccatccctagaagattctgaactgaagcaacatgtttctatcaatgaa
gatgttgactctggtgaacaccagccagctcttgattctccaactgaagaacatagggct
tcagaaggaggaagtgatagtgagaacagaatcgaggatgcagctgctgctgcaagatca
gcacagccaactggaaacaccttctccacaacaaaagtccgtacaaagttcccctttctt
ctgaagttccctcttcgtgagtatcagcatattggtttggattggcttgtaacaatgtat
gagaaaaggctgaatgggattctagccgacgagatggggctagggaagacaatcatgaca
atcgctttgcttgcacacttagcctgtgaaaagggcatatggggccctcatcttattgtg
gtcccaaccagtgtaatgctcaattgggagacggagtttctaaaatggtgccctgctttc
aaaatcctgacttattttggaagtgcaaaagagcgcaaattgaagaggcaaggctggctg
aaaccaaactcatttcatgtctgcataacaacgtatagactggttatacaagattcaaaa
gtcttcaagcgtaagaaatggaaatacttgattttagatgaagcccatctgattaaaaat
tggaagtcgcagagatggcaaacacttttgaacttcaattccaaacgacgcattttgctg
accggtactcctctacagaatgatctcatggaactttggtctctaatgcatttcttgatg
ccccacatatttcagtctcatcaggagttcaaggattggttcagtaatccaatatccggg
atggttgaggggcaagaaaaagtaaataaagaagttcttgatcgtctacataatgtcctc
cgcccattcattctccgccgtttgaaacgagatgtggagaaacagctgcctatgaagcat
gagcatgtcatatactgtagactttccaggaggcaacgcaacttgtatgaagactttatt
gctagctcagaaacacaagcaactctggcaagtaccaatttttttggaatgataagtata
ataatgcaacttcgtaaagtgtgcaatcatcctgacttatttgaaggtcgtccaattgtc
agttcctttgatatgaatggtatttacatgcaactgagttcttcaatatgttcaatgctt
tcgcctggaccattttctgtggtagaccttaagggattggggtttttatttactcatcta
gatttttcgatgtcttcttgggagagtgatgaagttaaagctcttgctaccccatcaagt
ttaattaaagagcgtgttacccggattcatcttgaagatattggtggatttaaacatcgt
aaacatcacaagaagatgcatggtatgaatatcttcgaagacatccagaaggcactcatg
gaggagagactaaggcaagcaaaagaacatgctgcagccgttgcgtggtggaattccttg
aggtctgatagaaaacctatatactcaacgagcctgagggatcttgttacagttagacat
cctgttgttgatattgctcatcacaaggctaaccctgtgtcctatatgtactcctcaaag
cttgctgatatagttctttcaccagtagaacgcttccagaaaacaattgacctggttgaa
agcttcgtgtttgcaattccagctgcacgagctgccccacctgtatgctggtgcagtaaa
tctgaaagttctgtgtttctgcaaccaacttataagcagaaatgctctgaagtcttgtca
ccacttctgtcaccatttagacctgcaatcgtccgtagacaagtatattttcctgatagg
agactaatacagtttgactgtggtaagttgcagcagcttgcagttttgcttaggaaattg
aagtcagaaggtcacagagctttgatattcactcagatgacgaagatgcttgacgtcttg
gaggctttcatcaatttatatggttacacatacatgcgtttagatggatccactccgcct
gaggagaggcagactttaatgcagcggtttaacacaaacccgaaattttttcttttcata
ttgtcaactcgtagtggaggtgttggtattaacctagttggggcagatacagttatcttt
tatgatagtgactggaatcctgctatggaccaacaagctcaagatcgttgccaccggatt
ggacagacacgagaagttcatatttatcgattgatcagtgagagcaccattgaagaaaac
atcttgaagaaagcaaatcagaagcgtactcttgacaatctagttatacaaagtggggac
tataacactgaattcttcaaaaagcttgatcccatggagctgttttctggtcatagagcg
cttcccattaagaacatgcaaaaggagaaaaatcacaacacaactgaagtttctctatct
aatgtggacctggaagctgcactaaagcatgcagaagatgaagcagattatatggcatta
aagaaagttgagcaggaggaagctgtggacaaccaagaatttactgaagaagccattgtg
agattggaagatgatgaattagtgaatgaggatgacatgaaggttgatgaacccacagat
cagggggctttgatgatgatgtcttcaaacaaagacagcggaatgatgttgaatgggagt
gatcctaatgaagaaagagctctcactggtgcttgtagggaagatgatgtggacatgatg
gctgatgtcaaacagatggctgcagcagccgcaggacaagagatctcatcctttggaaat
cagttacgtccgatagatcattatgcaattcgttttctagaattgtgggacccaataata
gacaagactgcagcagaatctcaagttagatttgaggagagagagtgggaactggaccgc
atagaaaagtacaaggaggaaatggaagctgagattgatgaagatgaagaacctcttgta
tatgaaacatgggatgctgaatttgcaactgaggcatatcggcagcaggttgaagccttg
actcaacaccagttgatggaggaactggaatatgaagccaaggagaaggaagatgaagca
gatgaaaatcttgattctctgaggtatgggatgccaagtgatcctaaacccaagcataag
aagaaatcgaagaaagcaaaatttaaatctctgaagaaacggtctctagcttctgagctg
gaacctgttaaaggagagctgcaagtggaacctatgttcatagatgaagattatctctct
aatgatgtgttttcctattcggatattgaatcacctcattcaagtgtgcagaaaaaacgc
aagaaggctgaatctaaaccagctggtgaagataagatttcaaagaagaagtctaagaaa
ctgaagaagtctcatcttgaaatcagtacttcagagtttgatactagtgtctcctcagtg
cagcatgttgaagcttcagagttaaaaccatgcgagagtgtggttgaattcgagcataaa
ccaatcagtagaaccaaaatgggagggaaaatatccatcactgccatgcctgtaaagcga
gttctaatgataaaaccagagaagctaaagaagggaaacatttggtctagagattgtatt
ccatcaccggatttttggttatcacaggaggatgcaattttatgtgctgtggtacatgag
tatggcccttattggagtttggtgagtgagacgctttatggtatgactgctggtgggttt
tatagggggagatatcgccatccaattcattgttgtgagaggtttagggaacttatccaa
agatatgttttctccgctccagacaatcctaattatgaaaaggtcaacaatataggatct
ggaaaagctcttttaagagtaacagaggaaaatattcgaatgttattaaatgttgctgcc
gagcagcccaatacagaatatttgattcagaaacacttcattgccctgctatcctctgtc
tggaagatggcatctcacaaagacgggagacaaaatctcccatcttctgggaatggtgta
tattttggcagaaattttttcagttcttccaaccaaatttctcggacttcagtgaaggaa
aacacaggaaccatgaaatttacccattttggacagggtgccaggttggtagcagctgca
cttaatgatgccagcagcaggcgaggggatgagtgtgtcatttctcccaaccctaggaaa
aaatcgtcaaccgatgctgaacagttggatataactctggagtttcaggcacaaaaggat
gactccacagatccatttccatctgttatcaatttatcaatatctgatataggccctcca
tcagaaaataaggcaacggaaccgtatcttctcagagattcctgtaatgactattgcaaa
agcaccagtgatgcaaatgtggctgagaaccgtttcaggaatgcaacaagagcttgcgat
gaagatactatggggtgggcttcatcgacattcccgacatatgatgtcaggtctcgatca
gtgtcaaagttaccttcctcaggaaagcacaagcttgtcttctccgatccagttagacct
tcaaaatccaagttcagaaaaaatgcagtagagcatggtgagatgcgtcactttctggct
gagcatgtattcccacccttgccaatagctgcaccgctgaatcccagtccaaggttcgac
ctaaacctacctgtcaatgaggatattgagactggtgatatggaaagcacttcccattct
caggtggttgagccttcatttgaagaaagctttggagttctcccacatgaatatgttcct
gaattgctttcaggccttgatgactgttcattattgccagaatatgatgacattgcctaa
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integrated database retrieval system
