Rosa chinensis (China rose): 112166549
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Entry
112166549 CDS
T06020
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112166549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112166549
03110 Chaperones and folding catalysts [BR:
rcn03110
]
112166549
03029 Mitochondrial biogenesis [BR:
rcn03029
]
112166549
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rcn04147
]
112166549
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
112166549
Messenger RNA biogenesis [BR:
rcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
112166549
Chaperones and folding catalysts [BR:
rcn03110
]
Heat shock proteins
HSP60 / Chaperonin
112166549
Mitochondrial biogenesis [BR:
rcn03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
112166549
Exosome [BR:
rcn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112166549
Exosomal proteins of other body fluids (saliva and urine)
112166549
Exosomal proteins of breast cancer cells
112166549
Exosomal proteins of colorectal cancer cells
112166549
Exosomal proteins of bladder cancer cells
112166549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
KH_PARP14_2
Motif
Other DBs
NCBI-GeneID:
112166549
NCBI-ProteinID:
XP_024159190
LinkDB
All DBs
Position
5:complement(89555757..89560047)
Genome browser
AA seq
605 aa
AA seq
DB search
MASTFAAMTSVGSLAAPSGRVGADKKFDTLSSRASISSFSFSKRPNVALRRTRSPRVSAM
AKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEV
ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGI
EKTTKALVHELKLMSKEVEDSELADVAAVSAGNNYEVGQMIAEALSKVGRKGVVTLEEGK
SAENSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLVNILEDAI
RGGYPVVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGDRKSQYLDDIAILTGGTVI
REEVGLTLDNVGKEVLGHASKVVLTKDTSTIVGDGSTQEAVNKRVAQIKNLIEAAEQEYE
KEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLR
LAAKVDAIKNALDNDEEKVGADIVKRALIYPLKLIAKNAGVNGSVVSEKVLSSDNFKYGY
NAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVPAANPMDN
SGYGY
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacttttgcagccatgacttcagttggctcattggctgctcccagtggccgt
gtcggcgctgataagaaatttgacaccttgtcttctcgtgcttccatttcttcattctca
ttctccaagaggcccaatgtagctctcaggaggacacgttcccctagagtctccgccatg
gccaaggagttgcatttcaacaaggatggttctgccatcaagaagctacaaactggtgtc
aacaagcttgccgaccttgttggggttacccttggtcccaaggggaggaatgttgttcta
gagagcaagtacggttcccccaaaattgttaacgatggtgtgaccgtggccaaagaggtt
gagttggaggaccctgttgagaacattggagctaagttggtaaggcaggcagctgccaag
actaatgacttggctggtgacgggacaacaacttctgttgttcttgcacaaggtcttata
gctgaaggtgtcaaggttgttgcagctggagcaaaccctgttctaatcacacgtggcatt
gagaagacaacaaaagctcttgtacatgagcttaagttgatgtccaaagaggttgaagac
agcgaactagcagatgtggctgctgtcagtgcaggaaacaactatgaagtaggacaaatg
attgctgaagccttgagtaaggtgggtcgaaagggtgttgtgacacttgaagaggggaaa
agtgctgagaacagtctttatgttgttgaaggaatgcaatttgatcgtggttatatctca
ccttacttcgtcactgatagcgagaaaatggctgttgaatatgagaactgcaagttgctt
cttgttgataaaaagataacaaatgcaagagaccttgttaacattttggaggatgctata
agaggaggatacccagttgtgataattgccgaagacattgaacaagaagctctggcaact
cttgttgtgaacaagctcagaggatctctaaagattgctgccctaaaagctcctggattt
ggagatcgcaagagccagtatctcgatgatattgctatattgaccggaggaactgtgatc
agagaagaggtggggcttacattggacaacgttgggaaggaggtccttggccacgcttca
aaggtggtgcttacaaaggataccagcacaattgttggtgatggaagtacccaggaagca
gttaacaaaagagtggcacaaattaaaaaccttattgaggctgcagagcaggagtatgaa
aaggaaaaacttagtgaaaggattgcaaaactatctggtggtgttgccgtgatacaggtc
ggagcacaaactgagacagagctgaaagaaaagaaacttagagttgaagatgctctcaat
gcaacaaaggcagctgttgaggagggtattgttgttggaggaggatgcacccttctgagg
ttggctgcaaaggttgatgcaattaagaatgctcttgataatgacgaagaaaaggttgga
gcagatattgttaaaagagctcttatttaccctctgaaattgatagccaagaatgctggt
gtgaatggaagtgtggtcagcgagaaggtgctctctagtgacaactttaagtacggatat
aatgctgcaactggaaactatgaagatttaatggctgctggaatcattgatcctaccaag
gtggtgagatgttgcctggagcatgcttcctctgtggcaaaaactttcttaatgtcggac
tgtgtagttgttgagatcaaggagccggagccagtgcctgctgcaaaccccatggacaac
tcaggatacggttactaa
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