Rosa chinensis (China rose): 112166578
Help
Entry
112166578 CDS
T06020
Name
(RefSeq) phosphomethylpyrimidine synthase, chloroplastic
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00730
Thiamine metabolism
rcn01100
Metabolic pathways
rcn01240
Biosynthesis of cofactors
Module
rcn_M00897
Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
112166578
Enzymes [BR:
rcn01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
112166578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-GeneID:
112166578
NCBI-ProteinID:
XP_024159221
LinkDB
All DBs
Position
5:74589483..74593286
Genome browser
AA seq
651 aa
AA seq
DB search
MASVHSALTSVVCKNGNHSSPAKFPSTPFLSGFDAVGRLSSPFKKDICLSSISSGPKATL
TFDPPATNSDKAKLPNLPRHTIDPASPDFLPLPSFEQCFPKSTKEQREVVHEETGHVLKV
PFRRVHLSGDEPAFDNYDTSGPQNINPRVGLPQLRKDWVDRREKLGTPRYTQMYYAKQGI
ITEEMLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSA
VASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVD
GIAENLNWEVFRQTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCL
AYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW
EKDVQVMNEGPGHVPMHKIPENMAKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAAN
IGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQEWDDTLSKAR
FEFRWMDQFALSLDPMTAMSFHDETLPAEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEH
GYGTTEEAVKRGMDAMSAEFLAAKKTVSGEQHGEIGGEIYLPESYVKSSER
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcatcggtgcatagtgccttgacatcagttgtgtgcaagaatggcaatcattcttcc
cctgcgaagttcccgagtactcccttcttgtctgggtttgatgctgtggggcgtctttca
agcccatttaagaaggacatatgcctgagttccatcagctcaggtcctaaggccacttta
acttttgatcctccagcaaccaattcagacaaagccaagttacccaacctaccgaggcat
acaatcgatcctgcttctcctgatttcctgcctcttccgtccttcgaacagtgttttcca
aagagcacaaaagaacaaagggaagttgttcatgaagaaactggtcatgtgctcaaagtt
ccctttcgacgagttcacctgtctggagatgaaccagcctttgataactatgacaccagt
ggtccgcaaaacattaacccacgtgttgggctccctcaactaaggaaagattgggttgac
aggcgggagaaattaggtacaccaagatacactcagatgtactatgctaagcagggaatt
atcactgaggaaatgttgtattgtgccacccgtgagaagcttgacccagagtttgtgaga
tctgaagtggctcgtgggagggcaattatcccttccaataagaagcacttggagcttgag
ccaatgattgttgggagaaagtttctggtcaaagttaatgcaaatataggaaactctgct
gttgccagctctatcgaagaggaagtttataaggtccaatgggcaactatgtggggtgct
gacactgttatggacctctctacaggtcgccatattcatgagacccgtgagtggatccta
cgtaactctgctgtgccagtagggactgtaccaatctatcaagcacttgaaaaggtagat
ggaattgcagaaaatcttaactgggaagttttcagacaaactctgattgaacaagctgag
cagggtgtagattacttcaccatccatgctggggttctactgcgttacatcccactaaca
gcaaagcgtatgacaggaattgtctcgcgaggaggatccattcatgcaaagtggtgctta
gcttatcataaggagaattttgcttatgagcattgggatgacatacttgacatctgtaat
caatatgatgtggccctgtcaataggtgatggcttgagacccggttccatttatgatgcc
aatgataccgcacagtttgcggagctcttaactcagggagaactgacccgcagggcatgg
gaaaaggatgtacaggtaatgaatgaaggacctggacatgttccaatgcacaagattcct
gagaacatggcaaagcagctggaatggtgtaatgaagcccctttctacactctcggtcct
ttgacaactgatattgctcctggatatgatcacatcacctctgccattggtgctgccaat
attggtgctctaggcactgcccttctctgctatgtaacccctaaagagcatcttggattg
cccaatcgggatgatgtgaaggctggagttatagcatataagatagctgctcatgctgct
gatctagccaaaggtcatccacatgctcaagagtgggatgacacattaagcaaggcaaga
tttgagttccggtggatggatcagtttgctttgtctctagaccctatgactgccatgtcc
ttccatgatgaaaccctgcccgcagaaggtgccaaggtggcccatttttgctcaatgtgt
gggccaaagttctgttctatgaagataacagaggatgttaggaagtatgctgaggagcat
ggttatggaactaccgaggaagctgtgaagcgtggtatggatgccatgagtgctgagttt
cttgctgccaagaaaactgtcagtggagaacaacatggtgaaattggtggagaaatttac
ttgccagaaagttatgtaaaatcctctgagaggtga
DBGET
integrated database retrieval system
