Rosa chinensis (China rose): 112166715
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Entry
112166715 CDS
T06020
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112166715
03041 Spliceosome [BR:
rcn03041
]
112166715
03036 Chromosome and associated proteins [BR:
rcn03036
]
112166715
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112166715
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112166715
mRNA cycle factors
Common to processing body (P body) and stress granule
112166715
Spliceosome [BR:
rcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112166715
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112166715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NPF
Motif
Other DBs
NCBI-GeneID:
112166715
NCBI-ProteinID:
XP_024159370
LinkDB
All DBs
Position
5:complement(88673865..88679339)
Genome browser
AA seq
623 aa
AA seq
DB search
MRASWADLAANSAAENVGSGSSANSAAGGAPTAGAPSRSTYVPPHLRNRPPSSDPPAPAY
SAPAGNDRGGYGGSRWGGGRNDNSRSGYGGSGGGGGRGGGWGGGRGGGWDRGRDREVNPF
EDDDETEQPFSEQENSGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGDALNKNIQRCKY
VKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMKGQPPQRPPRSHTACPL
ALILSPTRELSSQIHEEAKKFSYQTGVRAVVAYGGAPIHQQLRELERGVDILVATPGRLV
DLLERARVSLQNIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKE
IQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRANGTQGKQA
LTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSFKSGNTPILVATDVAA
RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSLAKSLADLMQE
SNQEVPAWLSRYAARSSYGGGRNRRSGGGRFGGRDFRRDSYSGGGSGGGGYGGSGGYGGG
GYGGSGGFSGGGGYGAGVTSAWD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcttcatgggcagatttggctgcaaattctgcagctgagaatgtaggttctggg
tcttctgctaacagcgctgccggtggtgctcccactgccggtgctccgtcgcggtccacc
tacgtccccccgcatctgcgtaaccgtccgccttcatcggacccacctgctccagcgtat
agtgcgcctgctgggaatgatcgaggtgggtatggtggatctcgttggggtggtggcagg
aatgacaacagtcggtctgggtatggagggagtggcggcggcggcggccgcggtggggga
tggggtggcggcagaggtggcggttgggaccgtgggagggacagggaagtgaaccccttt
gaagatgatgacgaaacagagcagccgtttagcgagcaggagaacagtggcattaacttt
gatgcctatgaagacattcctgtggagacaagtggtgacaatgttccaccccctgtgaat
acatttgcagagattgacttgggtgatgcacttaataaaaatattcagaggtgcaaatat
gtgaaaccaacacctgtgcagcggcatgccattccaatttcccttggaggtcgggacttg
atggcatgtgctcaaactggttctggcaagacagctgctttctgtttccctatcattagt
ggaatcatgaagggccaacctccacagagaccgccccgttcacatacagcctgcccactt
gctctcattttatctcctactagggagctttcttcgcaaatacacgaggaagctaagaaa
ttttcatatcaaactggtgtcagagctgttgttgcttatggaggagctccaattcatcaa
cagctgcgggaactggaaagaggcgttgatattcttgtggcaactcctggaagattggtg
gatttgctggagagagctagagtgtcattgcagaatattaggtatttagcccttgatgag
gctgatcgaatgctggacatgggttttgaaccgcaaataagaaaaattgtggaacaaatg
gacatgcctccaccaggtgtgcgacagactatgttgttcagtgccacttttccaaaagaa
atacagagactggcctctgattttctttccaagtacatctttctggctgttggaagggtg
ggttctagtactgatttgattgtccaacgagtggaatttgttcatgaatctgataaaaga
agtcaccttatggaccttctacatgcacaaagggccaatggtacacaggggaagcaagct
ctgacgttagtttttgtggagacaaagaagggagctgattccctggaacactggttgtgt
atgaatggttttcctgcaactactattcatggcgacagaacacagcaggaaagagaacaa
gcattgaggtcatttaagagcggcaatactccaattttggtggctactgatgttgctgca
cgtgggcttgatattcctcacgttgcacatgttgtcaactttgatcttccaaatgacatt
gatgattatgttcaccgcattggtcgtactggacgagctgggaaatctggtttggctact
gccttctttaatgagaacaattcatcactggccaagtctctagcagatttgatgcaagaa
tcaaatcaagaagtacctgcttggttgtcacggtatgcagctcgatcctcttacggtggt
gggaggaaccgccgttctgggggaggtcgatttggtggccgtgactttcgaagggattcc
tatagtggtggtggcagcggcggcggcggatatggcggttctggtgggtatggtggagga
ggatatgggggttctggtgggtttagtggaggaggaggttatggtgctggggtgaccagt
gcatgggactaa
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