Rosa chinensis (China rose): 112166821
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Entry
112166821 CDS
T06020
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112166821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112166821
03009 Ribosome biogenesis [BR:
rcn03009
]
112166821
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112166821
Spliceosome [BR:
rcn03041
]
Complex A
U1 snRNP components
U1 related factors
112166821
Complex B
112166821
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
Helicases
112166821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
PRAI
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
112166821
NCBI-ProteinID:
XP_024159496
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All DBs
Position
5:79415222..79422371
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AA seq
622 aa
AA seq
DB search
MIPSAFEIGRARTSRFFPVFHTSTHSLTLTHSRRINPTPEKLPRQSKTMSYVPPHLRNST
STTTTTTTTATTRTSSGTDADRSKLSYSSSNFHSNNNDKSSAASFSSFSHSNGSRWSSAA
HSPANRAISPPDAVVPQWKPSERVLRMKPELIEEVCLRLNLDVSVSPDSAPPPAPIESFT
DMCLHPSIMKDIAFHGYTMPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQHCL
AQPPVQRGDGPLALVLAPTRELAQQIEEEVKAFSKSLESFKTAIVVGGTNIAEQRSELRA
GVNIVVATPGRFIDHLQQGNTSVSRISFVVLDEADRMLDMGFEPQIREVMRNLSEKHQTL
LFSATMPEEIEGLAQEYLTNPVQVKVGKVSSPTANVTQSLEKVPDSEKTDRLLGLLVEES
SRAERAGHPFPLTIVFVERKTRCDDVAEALVAQGLHAVALHGGRTQTEREAALREFRKGT
TNILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMGQATSFYTDRDMF
LVANIKKAIADVGSGNALAFATGKTARRKEREAAAAHKQARVSLSKSSSMGPTSINIEDK
YKFMVSEPDNQTEGAADSAWDD
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgatcccttcagcttttgagattggccgagcacgaacctctcgtttttttcctgtattt
cacacttcaactcattcactcactctcactcacagtcgccgcataaatccgactccggag
aaacttccccgtcaaagcaaaacgatgtcgtatgtgcctcctcacctgagaaactcaacc
tcaaccaccaccaccaccactaccaccgccaccaccagaacctcctccggaaccgacgct
gatcggagcaagctctcttactcctcctccaactttcactccaacaacaacgacaagtcg
tccgctgcttcattctcctcgttctcgcactccaatggctcccggtggagttccgccgct
cactcgccggccaaccgagctatctccccgcccgacgccgtcgtccctcagtggaagccg
tcggaacgggtcctccgaatgaagccggaactgattgaggaggtgtgtttgcggcttaat
ttggatgtttctgttagtccagactctgctcctcccccggcaccaattgagtcttttaca
gatatgtgtttgcaccctagcattatgaaggatatagcatttcatggatacactatgcca
acaccaattcaagctcaagccatgccagttgccctcagtggaagggatttattaggttgc
gctgaaactggtagtggtaaaacagctgcatttgccattcctatgatacagcattgtttg
gctcaacctcccgttcagcgtggtgatggaccactagcattggtactggccccaactaga
gagcttgcacaacaaatagaggaagaggtcaaggcttttagtaaatctctcgagtccttc
aaaactgcaatagttgtgggtgggaccaacatagctgagcagagatctgagcttcgagca
ggagttaatattgtggttgctactcctggaagattcatagatcatttacagcaagggaac
acttctgtgtctagaatttcgtttgttgttctagatgaagctgatagaatgcttgacatg
ggttttgaaccacagataagagaggtgatgcggaacctttctgaaaagcatcaaactttg
ctgtttagtgcaactatgcctgaagagattgaagggttagcccaggaatatttgactaat
ccagtgcaagtgaaggtgggaaaagtgagtagccctacagcaaatgtaactcagagtttg
gagaaggttcctgacagtgagaagactgatcggcttctgggtttgctcgtagaggagtca
tctcgagctgaaagagctggacatccatttcccttaactattgtatttgttgaaaggaag
acacgctgtgatgatgtagctgaagctttggtagcacaaggtttgcatgcagttgctctt
catggtggacgtactcaaactgaaagagaggctgctctgcgtgaatttagaaaaggcact
accaacatcttggttgccaccgatgttgcatctcgtggtttggacgtctcaggagttgct
cacgttatcaatttggatcttccgaagagcatggaagattatgtacaccggattggaagg
actggaagagcgggatcaatgggacaagctacttccttctacactgatcgtgatatgttc
cttgtggcgaatataaagaaagcaatagctgatgtgggatctgggaatgctctagctttt
gctacggggaagactgcaagaaggaaagaaagagaagcagctgctgctcacaagcaagct
agggtttctctatccaagtcttcaagtatggggcccacatcaataaacattgaggacaag
tataagttcatggtttctgaaccggacaatcaaacagagggtgcagcagatagtgcttgg
gacgactaa
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