Rosa chinensis (China rose): 112166948
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Entry
112166948 CDS
T06020
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112166948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112166948
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112166948
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
112166948
NCBI-ProteinID:
XP_024159655
LinkDB
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Position
5:63063792..63068055
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AA seq
254 aa
AA seq
DB search
MAGATPTTYSPSPTTRKTKSLIFRNDDVDWVRTDGRDFHQCRPAFFKIGAVNAAAGSAYA
EFGNTKVIVSVFGPRESKKAMLYSDIGRLNCNVSYTTFATPVRGQGSDHKEFSSMLHKAL
EGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLGK
NLVIDPVLEEESYQDGSLMLTCMPSRYEVTQLTITGEWSTPKLNEGMQICLDACAKLATI
MRECLKGPDSALEE
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggctggagcaactccgaccacttactcgccgtcccctacaacccggaaaaccaaatct
ctcatctttcgaaacgacgacgtcgattgggtccgaaccgatggccgtgatttccaccaa
tgcagacctgcctttttcaagattggtgctgtaaatgctgctgcaggatctgcatatgca
gaatttggaaataccaaggtcattgtttctgtatttgggccaagagagagtaagaaggca
atgttgtacagtgatataggccggttgaattgtaatgttagctatacaacttttgccact
ccagttcgtggacaggggtcagaccacaaagagttttcttcaatgcttcataaagctttg
gagggtgcaataatattggaaactttccccaagactacagtggatgtttttgcattggtg
ttggaatctgggggcagtgatcttcccgtagtaatatcatgtgctagccttgctttagca
gatgcagggataatgatgtatgaccttgttgcctcagtctctgtgtcttgtctcggaaag
aaccttgttattgatcctgttctggaggaggaaagctaccaagatggaagcttaatgctt
acttgtatgccttcacgctatgaggtcactcagctaaccataacaggggaatggtcaacc
ccaaaacttaacgagggaatgcagatatgcctggatgcctgtgcaaagcttgcaacaatc
atgagggaatgcttgaaaggacctgattcggctttggaagaatag
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