Rosa chinensis (China rose): 112167379
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Entry
112167379 CDS
T06020
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112167379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112167379
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112167379
mRNA degradation factors
5'-3' decay
Decapping complex
112167379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
PEP5_VPS11_N
WD40_Prp19
WDR55
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
112167379
NCBI-ProteinID:
XP_024160161
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Position
5:complement(80987808..80995325)
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AA seq
1244 aa
AA seq
DB search
MALLGAPSSGLEMAPQPELSVPGSGGVSMVPTLPMGIPPSPARMPSNKLPKGRHLIGDSV
VYDVDVRLPGEFQPQLEVTPITKYGSDPQLVLGRQIAVNKSYICYGLKQGNIRVLNIHTA
LRSLFRAHTQRVTDMAFFAEDVHLLASVSVEGRLFVWKISEGPDEEGTPQITGKIVIAIQ
IVGEGEAVHPRVCWHCHKQEVLVVGIGKRVLRIDTTKVAKGEVPSAEDPIKCPVEKLVDG
VQFVGKHDGEVTDLSMCQWMTTRLVSASMDGTIKIWEDRKSQPLLVLRPYDGLPVYSSTF
VTAPNRPDHIILITVGPLNREVKIWSSESEEGWLLPSDAESWKCTQTLELKSSAQPRVED
AFFNQVIALSQAGLLLLANAKKNAIYAVHLDFGGEPASTRMDYIAEFTVTMPILSFTGTS
ISPHGEQIVQVYCVQTQAIQQYALDLSKCLPPPLENSGLEKSDSSFSHDATEAVSTNSAP
KPTIQATSSEGAALRYPVRTASVDPSNSKDITTSSMESKPVASAPEISDADTVFVASQPL
PLSPRLSGKLSGLRSPTGSSDHGGDQQVNEYSVDRQMNTARSNLSDMPALDDDARNDEQK
IAQDEVSSVLNPPIMFKHPTHLITPSEILMAASSSENTNPIDSNTEGDAKIQDVLVNSDV
GNPEVEVKVVGETRSTQIDEFGSQRELQNVVSENKEKFFCSQASDLGIEMARDCCAISSE
SYITDEARQGDGASMSEPLAQPHSGEEDQDLSTKDVSGSATATTTSQTPNAKSRKQKWKN
MQASGPSAPSPGVLNVVESSNEAGGSASPPSGEAAFPQIMAMQDMMNQLMTMQKELQKQM
TMMVTVPITKEGKRLEAALGRSMEKAVKANNDALWARFQEENAKNEKLLRDRTQQVTSLI
NNFVNKDFPVMLEKTVKKEIAAVGPAVVRAITPAMEKTIPLAISDCFQRGVGDKAVNQLE
KSVNSKLEATVSRQIQAQFQTSGKQALQDALKSSMEASVVPAFEKSCKAMFEQVDATFQK
GMVEHATVAQQHFESAHSPLAHALREAISSASSVTQTLSGELADGQRKLVALAAARGNSS
AVNPLVTQLTNGPLGGLHEKVEVPLDPTKELSRLVTERKYEEAFTGALQRSDVGIVSWLC
AQVDLHGILLLQPVPLSQGVLLSLLQQLACDINNDTPRKVAWMTDVAAAINPSNQMIAMH
VRPIFEQVYQILHHQHSLPTISSAEHASLRLLMHVINSMMMACK
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggccctgctcggtgctccttcctccggtctagaaatggcgccgcagcctgagttgtcg
gtccccggctctggcggggtttcgatggtgcccactcttcctatggggattccaccctcc
ccggctcgaatgccgagcaataagctgccgaagggcaggcatttgattggggatagcgtg
gtttacgatgtggatgttaggttgcccggggagtttcagccgcagctggaagttaccccc
attactaagtatggttcggatcctcagctggtgttgggccgccaaattgcggtgaataag
tcgtatatatgctatggattgaagcaggggaatattcgggttttgaatatacacactgca
ttgagatctttgtttcgagctcatacacagagggtcacagacatggctttctttgccgag
gatgttcaccttttggctagtgtgagtgtagaaggacggctttttgtgtggaaaatttct
gaaggtccagatgaagaaggtacgccacaaatcacaggaaagattgttattgccattcaa
atagttggtgagggggaagctgttcatccacgagtttgttggcactgtcataaacaggag
gttttggttgttggaattgggaagcgtgttctacgaattgatactactaaagttgcaaag
ggtgaagtcccttctgctgaggatcctattaagtgtcctgttgaaaagcttgttgatggg
gtccaatttgttggtaaacatgatggagaggtgacagatttatcaatgtgccaatggatg
accacccggctggtttctgcttctatggatggaactataaagatctgggaagatcgcaag
tcacaaccacttttagtactgagaccctatgatggccttcctgtttattcgtctacattt
gtgacagctcccaacagacctgatcacatcatacttataacagtgggcccacttaatcgg
gaagtgaagatctggtcctcagagagtgaagaaggctggttgcttcccagtgatgctgag
tcatggaaatgtacccagaccttagagttaaagagctctgctcaacctcgagttgaggat
gcattctttaatcaagtcatagcattgtcacaagctggccttcttttacttgcaaatgct
aagaagaatgctatatatgccgtgcacttagactttggtggtgagccagcatccacacgc
atggattacatagcagaatttactgttacaatgcctattttgagctttactgggacaagt
atatcacctcatggtgaacaaatcgttcaggtgtattgtgtccaaacacaagccattcaa
cagtatgctttggacttatccaagtgcttacctcccccattggagaattcaggtttggaa
aagtcagattccagtttttcacatgatgcaactgaggcagtgtcaactaattcagcacca
aaaccaaccatacaagctactagttctgagggtgcagccttgaggtatcctgtgcgcact
gcttcggttgatccttccaattcaaaagatattaccacttcatctatggaatcaaaacct
gttgcatcggcaccggagattagtgatgctgatactgtttttgtagcatcacaacctctt
cctttgagtcctaggttgtcagggaaactttctggtttaagaagcccgacaggtagcagt
gatcatggtggtgaccaacaagttaatgagtactcagttgacaggcagatgaatactgct
cgttcaaacttgtctgatatgcctgcactcgatgatgatgcaaggaatgatgaacagaaa
attgcacaagacgaagtatctagtgtgctcaatcctcctattatgttcaaacatccaacc
catttaataactccctctgagattttaatggctgcttcatcctctgagaatacaaatcca
attgacagcaacactgagggggatgcaaaaatccaagatgttcttgttaacagtgatgtg
ggtaatcctgaggtggaagttaaggttgtgggtgaaaccagatctactcaaatcgatgaa
tttggctctcaacgagaactccaaaatgttgtttcagaaaataaggagaagttcttttgc
tcccaggcatcagatcttggaattgagatggcccgggattgctgtgcaatatcatcagaa
tcttatattacagatgaagcccggcaaggtgatggtgccagcatgtcagaaccactagcc
cagcctcattctggagaggaagaccaggatctctctacaaaagatgtatctgggtcagct
actgccacaaccacatcacaaacaccaaatgcgaagtcgagaaaacagaaatggaaaaat
atgcaagcatcaggtccatctgccccatcaccaggtgtgctcaatgtagtagagtcctcc
aatgaagcaggtgggagtgcaagtcccccctccggagaagctgcatttcctcaaattatg
gccatgcaggatatgatgaatcagctaatgactatgcaaaaagaattgcaaaagcagatg
acaatgatggttaccgtcccaattacaaaggaaggcaaacgattagaggcggctctcggt
cggagtatggagaaggctgtaaaagccaataatgatgctttgtgggctcggtttcaagaa
gagaacgcaaagaatgagaaattattgcgagaccgcactcaacaagtaactagtttgatc
aataactttgtgaacaaggactttccagtcatgttagagaaaacggtaaaaaaagaaata
gctgctgttggaccagctgttgttcgtgcaatcactccagctatggagaaaacaatacct
ttggctatatctgattgctttcagaggggagtgggagataaagcagttaatcaattggaa
aaatcagtcaactcaaaacttgaagctaccgtatccaggcaaatccaggcgcagtttcaa
acatcgggtaaacaagctcttcaggatgctctcaagtctagcatggaagcttcagtggta
cctgcctttgagaagtcatgtaaagccatgtttgagcaagtagatgccacattccagaaa
ggaatggttgaacatgcaactgtggctcagcagcattttgagtctgcacattcgccgttg
gctcatgctttaagggaagctatcagctccgcatcatcagtgactcaaactctaagtgga
gaactggctgatggtcaacgtaagttagtagctcttgcagctgcacggggaaactcaagt
gcggtaaatcccctagtcactcaactaaccaatggacctttgggtggtctccatgagaag
gttgaggtgcctttggatccaacaaaggagctgtcaaggttggtaactgaacgcaagtat
gaggaggctttcactggtgctctacaaagaagtgatgttggcattgtatcatggttatgt
gctcaggttgatcttcatgggatactgttgctgcaacctgttcctctgagccaaggagta
cttctttcgctcctgcaacagctggcctgtgatatcaacaatgatacaccccggaaagtt
gcatggatgacagacgtggcagccgccataaacccatccaaccagatgattgcaatgcac
gtgagacccatctttgagcaagtttatcagatactgcaccatcaacatagcttgcctacg
atctccagtgccgagcatgctagtcttcgtcttctcatgcatgtcattaactccatgatg
atggcctgtaaatga
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