Rosa chinensis (China rose): 112167464
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Entry
112167464 CDS
T06020
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112167464
03015 mRNA surveillance pathway
112167464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112167464
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112167464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_10
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
112167464
NCBI-ProteinID:
XP_024160263
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All DBs
Position
5:complement(20654853..20660642)
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AA seq
407 aa
AA seq
DB search
MAKKPIRGRRSPPSGSGSASSSLSRSPSGSFSGSSSRSSSRSRSRSRSSASSSSRSGSSR
SPSPRSSKRSPGARRGRSPPPSKRASPPPRKSSPAHESLVLHIDKLSRNVNEGHLREIFG
NYGEVVHVELAMDRSVNLPKGYGYVEFKMRADAEKALLHMDGGQIDGNVVQAKFTLSQRQ
KSPPPKPVVTAPKRDTVKTDGINADKDGPKRLREASPRRRPPSPRRRSPVARRGGSPRRP
LDSPPPRRRAGSPYRRGDTSPRRRLISPSRGRSGSPPPRRRSPVRASPRRIRGSPPVRRR
GSPPPRRRSPPPRRARSPPRRSPISRRRSRSPPIRRPARSRSRSISPRRGRGPAMRRGRS
SSSSSGSPGPRKVVRRIPSRSPRRPARGRSSSSNSSRSSSPLPPRKP
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagccaatccgcggccggcgctcgccgccttccggctccggctccgcctca
tcctcactctcccgctccccttccggttctttctcaggctcttcctcccgctcctcttct
cgttcccggtctcgctccaggtcctccgcctcctcctcttcccgcagcggcagctctcgc
agccctagcccccgttcctccaaaagaagtcctggcgctcgacgaggtcgatctcctcca
ccatctaaaagggcatctccacctccaaggaaatcttctccggctcatgagtcacttgtt
cttcacattgataagctttcaaggaatgtgaatgaaggccatttaagagaaatttttggc
aactatggtgaagttgtacatgttgagctggcaatggatcgtagtgttaatcttccaaaa
ggatatggatacgtggagttcaagatgagagcagatgctgaaaaagcactattacacatg
gatggcggtcaaattgatggtaatgtagttcaagcaaaatttacattatctcagcgtcag
aagtcgccacctcctaagcctgttgtgactgctccaaagagagatactgtgaaaactgat
ggtatcaatgctgataaggatggaccaaagcgtttgagggaagcttctcctcgtcggaga
ccaccttcaccacgaaggagatctccagtggctcgtagaggtggatctccaagaagaccg
ctagattctccaccacctcgtcgtcgagcaggttctccttaccgacgtggtgatacatct
ccaagaaggaggcttatttctccatcccgaggacgttctgggtctccgccaccaaggcgg
cgatccccagttagggcttctccaagaaggatacgtggcagcccccctgttcgcagacgt
ggctctcctcccccaaggcgccgttcacctcctcctcgacgggctcgtagtcctccgaga
aggtctccaatcagtcgtaggcgtagccgttctcctcctattcgtaggcctgctcggtca
cgttcaagatcaatttcaccacggagaggtcgaggtccagcgatgagacgtgggaggtca
tcatcatcttcctctggatcacctggtccacgcaaggtagtccggaggataccatctcgt
agtccaagaaggcctgcaaggggaagaagcagtagcagcaacagcagcagaagcagttca
cctcttcctcctcggaagccatag
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