Rosa chinensis (China rose): 112167874
Help
Entry
112167874 CDS
T06020
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112167874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112167874
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112167874
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112167874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112167874
NCBI-ProteinID:
XP_024160731
LinkDB
All DBs
Position
5:82818334..82823596
Genome browser
AA seq
712 aa
AA seq
DB search
MNTHRPVRALSRALSRALSQSTSSSSFPLKNVTKSNFEPVLAELRRHVAAADFVAVDLEM
SGVTSAPWRDSLEFDRSDVSYLKVKDSAEKFAVLQFGVCPFRWDSSKKSFIAHPHNFYVF
PRQELPVESPTYEFLCQTTSIDFLAKYQFDFNMGIHEGISYLSRGQENEALRCFHLAYED
GSKLKEVRDAPLVKMADTLFTERMKNTFTEWRDGLLRNKNGGFQFQGISNDRQQHLETIF
FKMRPALSLNGFTSHQLKLIQLVIRRHFQDLSYVQVNGENSCQQRLVVHTDSKDDRESLM
KDVKDEHLRQAETKVQAAVGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFVGPLPSTAE
EFVSSVNKCFPHILDTKVLLNANIGLQQRMKKSQTSLSSAFASLCPQISLGAKSTDLAFQ
LCVKVEVQVDDLRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFEACLPSEKLAHNE
KLQKHINLLFLSWSKGDVIDLTTGNKNVMSVGSKNNKKRYLQISYEKIALIWGFSTKLKA
REIRECISKVFGLTSVVSIYHLDETAVFVQFNKEKLVSEFLSLKDTLERKDGPVSVLHPL
AGLLEGGNTRAADYETYKEICSSPNAKVLFADQAEAFGIQWKTKLVEAKALCLECESSGE
KKALNPASKSNEKSERKNMENVQSDSSTACVSNYKIIDSLIASRGDKVRTNL
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaacactcaccgcccggtgagggcgctctcacgtgccctgtcacgtgcgttatcccag
tctacctcctcttcctccttccctctgaaaaacgtgaccaaatcgaacttcgagccggtt
ctcgccgagctccgccgccacgtcgccgccgccgacttcgtggccgtcgacctcgaaatg
agcggagtcaccagcgcgccgtggcgggactccttggagttcgaccgctctgacgtcagc
tacctcaaggtcaaggactcggcggagaagttcgccgtgcttcagttcggcgtttgcccc
tttcgctgggactcctccaagaaatccttcattgctcatccgcacaatttctatgttttt
ccacgtcaagagcttcccgtcgaaagccccacttatgagtttctctgccagactacatca
attgacttcttagctaaataccagttcgatttcaatatgggtatacatgaagggatatct
tatttatctagagggcaggaaaatgaagcactgagatgttttcatttggcatatgaggat
ggatctaagttgaaagaagtaagggatgcccctttggttaagatggctgacactctcttc
actgaacggatgaagaatacatttaccgagtggcgtgatgggttgttgagaaataaaaat
ggagggttccaatttcagggaatctcaaatgaccgccagcaacatttagaaaccattttt
ttcaagatgcgtcctgctcttagtctaaatggatttacatctcatcaacttaaattgatt
caactggtcattagaaggcatttccaagatctttcttatgttcaggtaaatggggaaaat
tcatgtcaacagcgactagttgtgcatacagattcgaaggatgacagggagtcacttatg
aaggatgtgaaggatgagcatcttagacaagcagagaccaaggttcaagctgctgtgggg
tttcgtcatgttattgaccttctttcctcagaaaaaaagctgattgttggtcacaattgc
tttctggatattgcacatatatacagcaaatttgtaggtcctcttccttcaactgctgaa
gaatttgtatcttctgttaacaagtgttttccgcacatccttgacaccaaagtactcttg
aatgctaatattgggcttcaacaacggatgaagaaatcccaaacatcactctcgtcagca
tttgcatcattatgtccacaaatttcactgggggcgaaaagcactgatctggcattccaa
ttgtgtgtcaaagttgaggttcaggttgatgatttgaggtcctccaactggaattctgga
gccaaacatgaagctggatatgatgcttttatgacaggatgtgtctttgctcaggcctgc
agtcatctaggtattgattttgaagcatgtttgccctctgaaaagttggcccacaatgaa
aagctccagaagcacatcaaccttctattccttagttggagtaaaggagatgttattgat
ttaacaactggaaataagaatgtgatgtctgtgggatctaagaacaacaaaaaacgttac
ttgcagatttcatatgagaaaattgctttaatatggggattttcaaccaagctcaaggca
cgagagataagagaatgcatctccaaagtctttggcctgacctcagttgtatctatctat
cacttggatgaaactgcagtgtttgttcagtttaacaaggagaaattggtctctgagttt
ctcagtttgaaggacactttagagagaaaagatggtcctgtctcggttttgcatcccctt
gcaggacttttggaaggtggaaatacccgagctgctgattatgaaacttacaaagaaatt
tgtagctcacccaacgcaaaagtcttgtttgcagatcaggcagaggcatttggtatccaa
tggaaaaccaagttggtcgaagctaaggcattgtgcctagaatgtgagagttcaggtgaa
aaaaaagctttgaatcctgcttcaaaatccaatgaaaaatccgaaagaaagaacatggaa
aatgtgcagagtgattcatctactgcatgtgtctcaaactataagattatagattctttg
attgcttctagaggcgataaggtcagaactaatttgtga
DBGET
integrated database retrieval system
