Rosa chinensis (China rose): 112168222
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Entry
112168222 CDS
T06020
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112168222
03015 mRNA surveillance pathway
112168222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112168222
03041 Spliceosome [BR:
rcn03041
]
112168222
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112168222
Spliceosome [BR:
rcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
112168222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
112168222
NCBI-ProteinID:
XP_024161116
LinkDB
All DBs
Position
5:72452891..72458709
Genome browser
AA seq
857 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMRKVNMDVLRPWIANRVTELL
GFEDEVLINFIYGLLDVKEVNGKEIQISLTGFMEKNTVKFMRELWTLLLSAQNNASGVPQ
QFLDAKQEEARKKKEEADAIETQRKKDKETLELERSKKMDGGVDKKSSNAALEPNSNRVS
PMASSDRPDDERGNGKRNGVKPSNKVSRSPDSADSDSSLSPRFGERDRSRSVSISPKARG
RSISSERGRGYRSPQRRPITPRRRSPEGSLSPKGRSLSPKGRSPYSRRGSRSKSPRRSRS
PIVRRARSPYHRRSRSPGRRRSPPPFRSRRSPSPFRGRRSPYRRRRSPSPPRRRRLPSPI
RNRRSPSPIRRRRSPSPLRRRTSPLVRRRRSPSPARRRSPSPVRSSYRRSPRNRYASPLQ
RRSPVRGGRRSPPLRRRSPSPSDRSSSSPIRRDSPSPIRRTTKQQRSPLQSHQERTRSIE
NLSPAPQQSSGSEGSLQRESKNGNDYRKRVAALSPSPEKSPPMSESPPGARSVREKRRLS
SPYESPVKRPREQIAHYGSSSPSRKPREQKLRCDSPKESEEEEDAGRRPQSLERRSRDTS
RISKQIISPAKIPNKEEYSPERVASGQRFTESKSYVDNTESRNKEQEMKSGKSSGRGSNV
PIVHKDSLPGETQRASNPGEGKKADDKNRSHLKNTKDSEHRKPGSLRSSVEMIDHSNQSG
GLDSGSEDSDKGRSEDKEKRKNKRSERQEVTSDDDYSYDSAIEDRKEAKRRRKEEKRLRK
EKKRRRREERRRRREERRAEKQKVKNSSDASGSDGEHVTGRGFHSSDNEEEAVQKKLEIE
LRKKAIESLKAKKGISQ
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggttttttaggggtacttcggctgatcaggacacgaggttttctaataag
caagccaagctgctgaagtcgcagaaatttgcacctgaattggaacatttggtggacatg
aggaaggtgaatatggatgtgctccgtccatggattgctaatagggtaactgagcttctt
gggttcgaagatgaagttcttatcaacttcatttatggtcttttggatgtgaaggaagtg
aatggaaaggagattcaaatttcactgactggctttatggagaaaaatacggtgaagttt
atgagagagctttggacacttcttctcagtgcgcaaaacaatgccagtggtgtccctcaa
cagttcttggatgccaaacaagaggaagcacgaaaaaagaaggaggaggcagacgcaatt
gaaactcagaggaagaaagataaggagacgcttgaactagagagatcgaagaagatggat
ggaggggttgataaaaaatcaagcaatgctgctttggagccaaactcaaatcgtgtgtca
ccaatggcttcaagtgatcgtcctgatgatgaaagagggaatggcaagaggaatggtgtg
aagccaagtaacaaggtttctagatctccagattcagcagattcagattcatctttgtcc
cctcggtttggtgaacgagacaggtcaagaagtgtatccatttcaccaaaagcacgagga
cggtccatttcttctgaaaggggaaggggttatcgctctccacaaagacgaccgattacg
cctaggaggcgttcacctgagggatcactctccccaaaaggaagatcactctccccaaaa
ggaagatcaccttattccaggcgaggatcaagatcaaaatcaccacgcagatcgcgctct
cctatagtgcgtcgagctcgttctccctatcatcgtaggtcacgatctcctggacgtcgc
aggtcacctcctcctttccgaagccgcagatcaccctcaccttttcgaggccgtagatca
ccctatcggcgccgaagatcaccctcgcctccccgccgccgcagattaccctcacctatt
cgtaatcgcagatcaccatcacctatccgacgtcgcagatcaccctcccctctgcggcga
cggacgtcacctcttgtacggcgtcgcaggtccccctcacccgcacgtcgcagatcaccc
tctcctgttcgatcatcatatcgaagatctccacggaacaggtatgcatctccattgcaa
cggaggtcaccagttcgtggtggcagaaggtccccacctcttcgacgtaggtctccttcg
ccttctgatcgaagttcttcatctcctattcggcgtgattccccttcaccaatcaggaga
acaacaaagcagcagagatctcccctgcaatcccaccaagaaagaacaaggtccattgag
aacctgtctccagcgccacaacaatcttctggttctgaggggtcactgcagagggaatcg
aagaatggaaatgattaccgcaaaagagttgcagctttgtcaccatcaccagagaagtct
cctccaatgtcagaatctccaccaggtgcaaggagtgtgagggaaaagaggagattgtcc
agtccatatgaaagtcctgtgaaacgaccaagggagcaaattgctcattatggtagctca
agtccttcaaggaaaccaagagaacaaaaacttcgttgtgacagtcccaaagaaagtgaa
gaagaggaggatgcgggtcgcagaccccagtccttagagagaagatcaagagacacatca
cggatcagtaagcagataatttctcctgctaagattcctaataaggaagagtactctcct
gaaagagtagcatctggtcaaaggtttactgaatctaaaagctatgtggataatactgaa
agcagaaacaaagagcaggaaatgaagagtggaaaatcctctgggagggggtcaaatgta
ccaattgtccataaagactctctgccaggtgagacacaacgggcatcaaatcctggtgaa
ggtaaaaaagctgatgataagaaccgctctcatttaaagaataccaaggacagcgaacat
cgtaaacctggatctttacgctcatctgttgaaatgattgatcatagtaatcagagtggc
ggtttggattctggttctgaggacagtgacaaaggcagaagcgaagacaaggaaaagaga
aagaataagagatcagagaggcaagaagtgacttcagatgatgattacagttatgattct
gcaattgaggacagaaaggaggctaaaaggaggaggaaagaggaaaagaggttgcggaag
gagaagaagcgccgaagacgtgaggagcgacgacgcagaagagaagaacgtcgtgcagag
aagcagaaagtgaagaactccagtgatgcttctggttcagatggtgaacatgtcaccgga
agggggtttcattcaagtgacaatgaagaagaggctgttcagaagaaacttgagattgaa
ttgcgcaagaaggctatcgaatcactcaaagcaaaaaagggcatcagtcaataa
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