KEGG   Rosa chinensis (China rose): 112168225
Entry
112168225         CDS       T06020                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03030  DNA replication
rcn03410  Base excision repair
rcn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112168225
   03410 Base excision repair
    112168225
   03420 Nucleotide excision repair
    112168225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcn03032]
    112168225
   03400 DNA repair and recombination proteins [BR:rcn03400]
    112168225
Enzymes [BR:rcn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     112168225
DNA replication proteins [BR:rcn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    112168225
DNA repair and recombination proteins [BR:rcn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      112168225
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 112168225
NCBI-ProteinID: XP_024161120
LinkDB
Position
5:57268214..57291027
AA seq 2213 aa
MSGYESRKRDRRDAWSSKKQQKLTRTADEDLESKLGFDLFSEGETRLGWLLTFATSSCED
QDTHKVYSCVDLYFVTQDGSAFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESRIADIE
IVAKEDLDLKNHLSGLHKSYLKLSFDTVQQLMNVKSDLLQVVERNHTKFDAAEAYESILL
GKREQRPQDFLDCIVDLREYDVPYHVRFAIDNDVRCGQWYNVSVSSAGVMLERRTDLLQH
AEVHVCAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGADIEYLEYTPKE
EFVGHFKVTNVENERELLRQWFAHMREVKPGIYVTYNGDFFDWPFLETRAAHHGFKMNDE
VGFLCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPIEVNPEDMV
RFAKEEPQRMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLL
MVQAYKANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDLPTNFRLDPAA
YEQLINNLDRDLQYAIRVEGKMDLDSVSNYDEVKGSILEKLVRLRDEPIREECPLIYHLD
VAAMYPNIILTNRLQPTSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMAKRSDYYHL
KKQIESESVDGATSKQSRSFLDLPKMEQQTRLKERLKKYCQKAYKRVVDKPVTELREAEI
CMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASKNSIKIQEAQNMVVLYDSLQL
AHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWC
VLPGSFPENFTFKTKDLRKKLTISYPCVMLNVDVARNNTNDQYQTLTDPIEKTYATHSEC
SIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQA
ELFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLAEYG
SQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMK
FYVRKWCKVSDVDIRSIIDWSYYKQRLGSAIQKIVTIPAAMQKVANPVPRVVHPDWLHKK
VREKEDKFRQRKLVDMFRSNGDHLVQNDDAIGSNHVVDEDIVEDLEDFKCKSSSISRPRP
IVHCYEVNNQKNSVKANGKGGPEQQQTNHIENAHQEQTAVTQEEIDKNVDYQGWLAIKKR
KWKDTLDKRKKQRLNNARSAHNANDKMLGGGRNLKGAQGKIGVNSYFRSHEDALTRCHWQ
ILQLVPSSESGQILAWLVVEGMMLKIPLNVPRIFYINSTSPIKEELKEELPGKYVNKTLP
HGRHSYYLFEVSVDEKRFRTLRKKLAALIADPDIEGIYETKVPSEFNVITQIGCVCKLDK
KAQGDAKSGWSVSALDMKNTTECSYLAQSIAFFYLYHSISEGRAIFVAYFPASRTIIVVV
VNPYQNKDLSPSFLEKQFRDACQALSLQLPPRNGIIIKVDYVGYVKDAEKILHQAINEHR
HDHGPTVAVIECPNVQLMKSGIRALDDFPCVSIPCNARDSQYQVLGWQQVAAKIGMQRCA
ASSQWLIDRISLSRYAHVPLGNFEVDSLMHTADIFFSRALRDSQQVLWISDDGIPDLGGI
NEEGGFFADEVHQPFVITKPGAYRKVTVELKIHHLAVDALLKSNQVNEMEGGALLGFESD
MNSGSHTSNMQAAFDEATSSAPAFRVLKQLIHRCLADAHTSGNVYADALLQHLYRWLCSP
QSKLHDPALQRLLHKVMKKVLLILLDEFRKLGATIIFANFYKVIIDTGKFDISAAKAYCD
SVLKTLQKRELFEWIELEPLHYWHSLLFMDQYNYGGIPVRADESMHGESQVDIVSSWNIA
EYLPKKIQDHFIFIVSQFLYIPWNYAQKQSAIRATLQDGSSCTQSITVAAAETLESHMTD
FLKGQISSYFTEKLLGIVRDTILHMKELNKSENDYRTSPGLPQLAGNIHKGDAALEFIKN
VCGVLLIDQSVEHDVMVMRSNLLKYMHVRESAPEAQFCDPCPSLFLRNVICSYCNDCRDL
DICRDSALLAGEWRCAVPQCGQPYDRELMENTLLQIVQQRERLYQLQDLVCLRCNQVKAA
HLAEQCGCAGSFSCKEDAAEFCEKMQLILKIAIHQKFQFLQECTEWILEVEKH
NT seq 6642 nt   +upstreamnt  +downstreamnt
atgagcggctacgagagccggaaacgggaccggagagacgcgtggagctccaagaagcag
cagaagctcacgcgcaccgccgacgaagacctcgagtcaaagctcggattcgatctattc
tccgaaggtgaaactaggctcggctggttactcactttcgcaacgtcatcctgtgaagat
caagacacccataaagtttatagctgcgtcgatctgtatttcgttacacaggatggctct
gctttcaagtcaaaatataagtttcgcccttatttctatgcagccacaaaggaaaaaatg
gaaatggatgttgaagcatatttgagacggcgctatgaaagtcgtattgctgatatcgaa
atagtggcgaaagaagatcttgatcttaaaaaccatttgtctggcctacacaagtcctat
ttgaagttatcatttgatactgttcaacaattaatgaatgtcaagagtgacctattgcaa
gtcgtcgaaagaaaccacacaaaatttgatgctgctgaagcttatgagtcaatactgcta
gggaaacgggaacaaaggcctcaagatttcctagattgtattgttgatcttcgtgaatac
gatgttccctaccatgttcgcttcgctattgacaatgatgtgcgatgtggccagtggtac
aatgttagtgtatccagtgcgggtgttatgcttgagaggaggacagatcttctgcagcat
gctgaagttcatgtttgtgcatttgatattgagacaactaagctgcccttaaaatttcca
gatgctgaatatgatttaataatgatgatttcatacatggttgacggacaagggtacctg
attattaatagagagtgtgttggagctgatatagagtatttggagtacactccaaaagaa
gaatttgtagggcatttcaaggtgacaaatgtggaaaatgagagagagcttctaagacag
tggtttgcccatatgcgggaggtgaagcctggaatctatgtcacatacaatggtgatttt
ttcgattggcctttcctggaaacgagagctgcacatcatgggttcaaaatgaatgatgag
gttggatttttatgtgacaagaatcagggggaatgtagagctaaatttgcttgtcatctt
gattgctttgcttgggtcaaacgtgatagttatctgccccaagggagccagggccttaag
gctgttacaaaggcaaagttgggttatgatccaatagaggtgaatcctgaggatatggtt
cgctttgcgaaagaagaacctcagaggatggcatcctattctgtttctgatgctgttgca
acctattacttgtacatgacctatgttcatccatttatcttctctcttgcaactattatt
ccaatgtctccggatgaggttttgcgtaagggtagtggaaccctttgtgaaatgctttta
atggtccaggcatacaaggcaaatgtcatctgtcctaacaagcaccaatctgacccggaa
aagttctataaaaaccaccttttggaaagtgagacttacataggtggccatgtggaatgc
cttgaaagtggtgttttcagatctgatcttccaactaattttaggcttgatccagctgct
tatgagcaattgatcaacaaccttgatcgagatcttcaatatgctatcagagtagaggga
aagatggacttggattctgtgtccaattatgatgaagtgaagggttctattctggaaaag
cttgtgaggttgcgagatgaaccaatacgagaagaatgcccacttatttatcacctggat
gtagctgcaatgtatcccaacattattttaacaaacaggcttcagcccacatcaattgtt
acagatgaggtctgcactgcttgtgatttcaaccgtccagggaagacatgtctacgaaag
ctggaatgggtttggcgtggagaaatattcatggcaaaaagaagcgactattatcatttg
aagaagcaaattgagtctgagtctgttgacggtgccacttccaagcagtcaaggtctttt
cttgacttgcctaaaatggaacaacaaacaaggctcaaagaacgtctaaagaaatactgt
cagaaggcatataaacgtgtagtagacaagccagtcactgaacttcgggaagcagagatt
tgcatgagggaaaattcattctatattgacacagttcgcagctttcgagatagaaggtac
gagtataaagggcttaataaggtttggaagggcaagttgtctgaagcaaaggctagtaaa
aattctataaaaatccaggaagcacaaaatatggtggtgctttatgattccctacaactt
gcacataagtgtatacttaactccttttatggatacgtcatgcgcaagggtgcaagatgg
tattcaatggaaatggctggagtagttacatatactggagctaaaattattcagaatgct
cggctgctagttgaaaaaattggaaagcctcttgagttagatacagatggtatctggtgt
gtgcttcctggatcttttccagagaactttactttcaaaacaaaagacttgaggaagaag
ctaactatctcatatccatgcgtcatgcttaatgttgatgtggcgagaaacaatacaaac
gatcaataccagactcttacagatccgatcgagaaaacttatgcaactcatagtgaatgt
tcaattgaatttgaagtggatggaccatacaaggcaatgattattcctgcttctaaggaa
gaaggaattctaattaagaagcgctatgctgtctttaatgatgatgggacccttgctgaa
cttaaaggttttgagatcaaacgtagaggtgagctgaagctcatcaaagttttccaggct
gaactttttgataagttccttcacggttctacattagaggaatgctattcagcagttgct
tctgttgccaaccgctggcttgatcttcttgataatcaaggaaaggatatagcagacagt
gagttgcttgattatatatcagaatcaagcaccatgagcaagtctttggcggaatatgga
agccaaaagtcatgtgcagtaaccactgcaaggcgtcttgctgattttcttggtgataca
atggtcaaagataaaggactacgttgccagtatatagttgcatgtgaaccaaagggaaca
cctgtcagtgagcgtgctgttccagttgcaatattcgaaacagatgctgaaattatgaag
ttttatgtacggaagtggtgcaaggtctctgatgttgacatcagatccattatagattgg
tcctattacaaacaacgtctaggttcagcaattcagaaaatcgtcacaattcccgctgca
atgcaaaaggttgcaaatcctgtccctagggtagtccatcctgattggctacataagaag
gttcgtgagaaggaagataaatttcgacaacgcaaattggttgatatgttcaggtcgaat
ggggatcatctggtgcaaaacgatgatgctattggctctaatcatgtggtagatgaagat
attgttgaagatttggaagacttcaaatgcaaaagcagttccataagtagaccgagacca
attgttcactgttatgaagttaataaccagaaaaattcagtcaaggcaaacggtaaagga
ggtccagagcaacaacaaactaatcatatagaaaatgctcatcaagagcaaactgctgtc
actcaggaagaaattgacaaaaatgtagattatcaaggatggcttgcaataaagaaaaga
aagtggaaagatactcttgacaagaggaagaaacaacgattgaataatgcaaggtctgct
cataatgctaatgacaagatgcttggtggtgggagaaatctcaaaggggctcaggggaaa
ataggtgtgaattcatattttaggagtcatgaagatgccctaactcgctgtcattggcag
atattacaactagttccgagttctgagagtggccaaattttggcgtggcttgttgttgaa
ggaatgatgcttaagattcctctaaatgttccaagaattttttacatcaattctacatca
cctataaaagaagaattgaaagaagaattaccagggaagtatgtcaacaagactcttcct
catggaagacatagttattacctatttgaggtttcagttgatgagaagaggtttaggaca
ctgagaaaaaagcttgcggctcttatcgctgatccagatattgagggaatatatgaaaca
aaggtgccttcggagtttaatgtaatcactcagattggttgtgtctgtaaattggacaaa
aaagctcagggagatgccaaaagtggctggagtgttagtgcactggacatgaagaatacg
acagagtgctcttatctggcccaatccattgctttcttttatttgtatcacagcatctct
gaagggcgcgcaatatttgttgcttattttcctgcatcaagaacaataattgttgtggtg
gtgaatccttatcaaaataaagatttgtcaccatcttttcttgaaaaacaattccgcgac
gcttgccaggcattatcacttcagctgcctcctaggaatggaatcattatcaaggtagac
tacgttggatatgtaaaggatgctgaaaagattttgcaccaagcaattaatgagcacaga
catgatcatggacctacagttgctgttattgaatgcccaaatgttcagttaatgaagtca
ggtatacgagctcttgatgattttccatgtgtgagcattccatgtaatgctcgagacagt
caatatcaggtccttgggtggcaacaagtggccgcaaaaattggcatgcaacgatgtgct
gcatcatctcagtggttgattgatagaatttctctctcaagatatgcacatgtaccattg
ggcaattttgaagttgactcccttatgcatacagctgatatcttcttttcaagagcatta
cgtgatagccagcaggtgctttggatatctgatgatggtattccagatctaggaggcatt
aacgaagaaggtggattttttgcagatgaggtccatcaaccatttgtaattactaaacct
ggagcatatagaaaggtcactgtggagctaaagatacatcatctggctgtagatgctctt
ctgaaaagcaaccaagtgaatgaaatggaaggaggtgctttgctaggatttgaatcagac
atgaactccggatcacatacctctaatatgcaggctgcctttgatgaagctacatcatct
gcacctgcattccgtgttttgaaacagttgatccaccggtgtcttgcagatgcacataca
tctggaaatgtgtatgctgatgcactactgcaacatctgtatcgatggctttgcagcccc
cagtctaaacttcatgatccagcacttcaacgcctacttcacaaggtcatgaaaaaggtg
cttttgattttattggatgagttccgcaaattgggtgcaactatcatatttgcaaatttc
tataaggttattatagacacaggaaaatttgatatatccgcagccaaagcttattgtgat
agtgtgcttaaaactctccagaaaagagaactatttgagtggattgagcttgaaccattg
cactactggcattctttgcttttcatggatcagtataattatggtggaattccggttaga
gctgatgaaagcatgcatggtgaatctcaagtggatatcgtatcgagctggaacattgct
gaatacttacccaagaaaattcaggaccattttatttttattgtttctcagtttttgtat
attccctggaattatgcacagaagcagtcggccattagagcgactttacaggatggcagc
agttgcacacaatcaattacggttgcagctgctgagactttggaatctcacatgaccgat
tttcttaaaggacagatcagctcgtactttactgaaaagcttctgggaattgttcgtgat
acaatacttcatatgaaggaactgaacaagtccgagaatgactatcggacatctcctggg
ctgccacaacttgctggtaatatccacaaaggagatgcggcacttgagttcattaagaat
gtctgcggtgttttgctcattgaccaaagtgttgagcacgatgttatggtaatgagaagt
aatctattaaaatatatgcatgtgagggagtctgctcctgaagctcagttttgtgatccc
tgcccatccttgttcttacgaaatgtcatttgcagctactgcaatgactgtagagaccta
gacatctgccgtgattcagctctactagctggggagtggcgctgtgctgtgccccaatgc
gggcagccttatgacagagagcttatggagaatacccttcttcagattgtacagcagaga
gagcgtctctaccagctacaggatctggtgtgtctcaggtgtaaccaagtgaaagctgca
catttagcagaacaatgtggatgtgccggctcttttagctgtaaggaagacgcagctgaa
ttttgtgaaaagatgcagctaatcttgaaaattgcaattcatcagaaatttcaatttcta
caagagtgcactgagtggattttggaagttgagaaacattaa

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