Rosa chinensis (China rose): 112169420
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Entry
112169420 CDS
T06020
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03008
Ribosome biogenesis in eukaryotes
rcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112169420
09123 Folding, sorting and degradation
03018 RNA degradation
112169420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112169420
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112169420
03009 Ribosome biogenesis [BR:
rcn03009
]
112169420
03016 Transfer RNA biogenesis [BR:
rcn03016
]
112169420
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112169420
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
112169420
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-60S particles
RNases
112169420
Transfer RNA biogenesis [BR:
rcn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
112169420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
112169420
NCBI-ProteinID:
XP_024162214
LinkDB
All DBs
Position
6:62684426..62692838
Genome browser
AA seq
1042 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDVVEEEPVVIDEVSIPVDTSKPNPNGEYDNLYLDMNGIIHP
CFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRA
AKDAADAAAEEERLREEFEIEGRKLPPKLHSQTFDSNVITPGTPFMAVLSIALQYYIHLR
LNNDPGWKNVKVILSDANVPGEGEHKVMSYIRLQRNLPGYDPNTRHCLYGLDADLIMLAL
ATHEVHFSILREVVFVAGQQDKCFLCGQVGHLAASCEGKAKRKAGELDEKGDAEAVAKKP
YQFLNIWTLREYLEYEMRIPGAPFEIDIERIVDDFIFLCFFVGNDFLPHMPTLEIREGAI
NLLLAVYKKEFRGMGGYLTNASKPNLRRVEHFIQAVGSYEDKIFQKRAQLHLKQAERIKR
QKAQARRGDDAEPQVQPDSLVAVNRFHGSRLASGPSPVPFHQSGSGRGNPRKVARLSSEA
STVGAAIVEAENILEDVHENKEDLKIKLKEVLREKSDAFNSKNPEEDKVKLGEPGWRERY
YEEKFNAKTPEEREAIRRDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDL
GQLDISFELGSPFKPFNQLLGVFPAASAHALPEAYRKLMTDPNSPLIDFYPTDFEVDMNG
KRFAWQGIAKLPFIDEVRLLSEVEKLEHTLTEEESRRNSVMFEMLFVTSSHPLSVCIYSL
DNRCKQLTDKERVEFKEQIDPKYRDTCSEGMNGYLSPCAGEPCPPVFRSPVESMEDIMDN
QVICAIYRLPDVHEHITRPPAGVIFPKKIVSSGDMKPAPVLWHEDSGRKPWHDNSGRRPY
ESSRQHPPGAISGRQLGDAAHRLVVNSLHVKANSNGYGNQMPAHQPYAEPPYYPPRASYA
SNGSYDQGHHSMAPPRTFQHPQVQHQNSYHPPNRPHSQHYERNSGHSYYQSARHQNGGIA
YPQRPITPAPPGVNPGPYPVGYNNYQSYQQAGPPGYQGIDAWVPPPQNMGRGYGRPQQSG
NPYSGLDRRGNRRPPPSQHGRK
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagctttctacagatggctagcggagaagtatccactcgtcgtcgtcgat
gtggtggaagaagaaccggttgtaatcgacgaagtttcgattccggtcgacaccagtaag
ccaaaccctaacggcgagtatgacaatctgtacctcgacatgaatgggattattcacccc
tgttttcaccctgaggataggccttctccaactacctttgatgaggtatttcagtgcatg
tttgactacatagataggctttttgtgatggtgcggcctcggaagctactgtacatggca
attgatggtgttgcccctagggcgaaaatgaatcaacagagatcccggcggtttagagct
gctaaagatgcagcagatgcggcagctgaagaagaaaggctgcgtgaggagtttgaaata
gagggaagaaagcttccacctaaactgcattcgcaaacttttgattccaatgtcattact
cctggaactccatttatggctgttttgtcaattgcattgcagtactatattcatcttaga
ttaaataacgatcctggatggaaaaatgttaaggtcattctttccgatgcaaatgttccg
ggtgaaggggagcacaaggttatgtcatacattcgtcttcaaagaaatcttcctggttat
gatccaaatacacgtcattgcctgtatggtttggatgccgatttaattatgcttgccttg
gccacccatgaagttcatttctccattcttcgagaggttgttttcgtcgctggacagcag
gacaagtgcttcctgtgtggtcaggtgggtcatttagctgccagttgtgaaggaaaggca
aaacggaaggctggagagcttgatgagaaaggtgatgccgaggctgtggccaagaagccg
taccagtttctcaatatttggacccttagagaatatttggaatatgagatgcggattcca
ggtgccccatttgagattgatattgagcgcattgtggatgactttatattcctttgtttc
tttgtcggaaatgatttcttacctcatatgcctacactggagattcgggagggtgcaatc
aacttgcttttggctgtatataaaaaggaatttaggggaatggggggatatctgactaat
gcaagcaagccaaatttgaggcgggtggagcatttcattcaggcagttggaagttatgaa
gataaaatattccagaaaagagctcaactgcatctgaagcaagcagaaagaataaagcgt
caaaaggcacaagctcgaagaggagatgacgcagagccccaagtgcaaccagattcttta
gttgcagttaatcggtttcatggttctcgtcttgcttcaggtccttcacctgtgccgttt
caccaatctggatctggtagaggaaatcctcgaaaggttgcacgcttgtcttcagaggca
tcaactgtcggtgctgctattgttgaagctgagaacattcttgaagatgttcatgaaaac
aaagaagatttgaaaataaagctcaaggaggttcttcgtgagaaatctgatgcttttaac
tctaaaaatcctgaagaagacaaggttaaattgggtgaacctggatggagagagaggtat
tatgaagagaagtttaatgcaaaaactcccgaagaacgtgaagcaattcgaagagatgtt
gttttgcgttacactgaaggtctgtgttgggtgatgcactattattatgaaggggtttgt
tcatggcagtggttttacccttaccattatgcgccctttgcttctgatctcaaggacctc
ggtcaactagatataagttttgaattgggcagtccctttaaaccgttcaatcagctgtta
ggggtttttcctgctgcaagtgcccatgcccttcctgaggcatacaggaagctgatgact
gatccaaactcacctcttattgatttttaccctactgactttgaagtggatatgaatggg
aaacgatttgcatggcagggtattgcaaaactccctttcattgatgaagtccgtcttctt
tctgaggttgaaaaacttgaacatacattaacggaggaggaatcacgcagaaacagtgtg
atgtttgagatgctctttgttacatcttctcatcctctctctgtgtgcatatattctctt
gacaatcgctgtaaacaattgacagacaaagagcgtgttgagtttaaggaacaaattgat
cccaaatacagggatacatgcagtgaagggatgaacggctatctatctccatgtgctgga
gagccgtgtcctcccgttttccgatctcctgttgaaagcatggaggatataatggacaac
caagtcatatgtgcaatatacagactaccagatgtacacgagcatataactcgaccacca
gcaggggtcattttccctaagaagattgtgtcatcgggggatatgaagcctgcacctgtt
ttgtggcatgaggattcagggaggaagccatggcatgacaattcggggaggaggccatat
gaaagttctagacagcaccctcctggagccatttctggaagacagcttggcgatgccgct
catcgacttgttgtcaatagtttacatgttaaggcaaacagcaatgggtatggcaatcag
atgcctgcccatcaaccatatgccgaacctccatattacccaccacgggcttcgtacgca
agtaatggaagctatgatcagggacaccacagtatggcaccacctagaacattccagcat
cctcaagtgcaacaccaaaattcctaccaccctccgaatagacctcattctcaacattat
gaaagaaattctggtcactcatactatcagtcggcccgtcatcagaatggtggaattgct
tacccccagagaccaattacaccagctccaccaggggtcaatccaggtccttatccagtt
ggttataacaactatcagagttaccaacaagcagggccgcctggttatcaaggcattgat
gcctgggttccaccgccccaaaatatgggcagaggatatggtcgtcctcagcaatctgga
aacccgtactctggattggacaggagaggaaataggagaccacctccatcccagcatggc
cgcaagtag
DBGET
integrated database retrieval system
