Rosa chinensis (China rose): 112169883
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Entry
112169883 CDS
T06020
Name
(RefSeq) WD repeat-containing protein PCN isoform X1
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112169883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcn03009
]
112169883
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
112169883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
ANAPC4_WD40
WDR55
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_IP5PC_F
Beta-prop_IFT122_1st
BT_3657-like_N
Beta-prop_SCAP
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
112169883
NCBI-ProteinID:
XP_024162740
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Position
6:complement(67318601..67324107)
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AA seq
817 aa
AA seq
DB search
MLEVYRNSSVDWKPSPVVALATSVDDSQVAAARADGSVEIWLVSPGAVGWHCQLTIHGDP
NTSVSSLIWCRAGSKGLPCGRLFSSSLDGSVSHWDLFNLKQTTVLDSVGVSIFNMAVAPC
VNDTENGFLNDNGGDPETSDSETSDSEDDSDSDDDHAPSVLVNPRVALAGGDGFLQIYSI
NDADEFVYTKSLPRVNGSVLSVAWSPDAKFIYAGSTDGMIRIWDARGGIEKHRITVGLGG
LGSGSELCVWALLSLRCGTLVSADSTGSVQFWDSQHGTLLQAHSYHKGDVKALAAAPSHN
RVFSAGSDGQVILYKLSSETLGSSVGSSPNVMKKWIYVGYTRAHTHDVRALAVAVPISRE
DPLPDQGRKRARRKDKPVDFGYLKWAHLGVPMLISAGDDTKLFTYPVKEFTQFSPHDICP
APQRVSIQLAPNTEFSQTSLLLVQGSHSLDILHVRVKAGAFFDMARGSSGGLASTNGLFQ
IKSSRKIICSTISNSGVFFAYSDHVKISLFELKKCIRSGKKEVKCKVGESELTLNKRELP
RKLPFAHSMVFSFDSSRLMIAGHDRRIYVVDVHSSELVHAFSPCRDLHDQELPPGEPPIT
KMFTSSDGQWLAAINCFGDVYVFNLEIQRQHWFISRLDNASVTAGGFSPRNNNVLIITTS
SNQVYALDVEERKLGDWSKQHTYVLPKRFQEFPGEVIGLSFPPSPSTTSVIVYSARAMCL
IDFGMPIDRDDESDMINGQDPALRNFQSNGKLKRKWTDSQTKSKLFGRKNFEFIPFGDPV
LFIGHLSKSSVLKIYKPWMEVVRNFDSAPVDKHTFGT
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagtctataggaacagctccgtcgattggaagccgtcgccggtcgttgcccta
gccaccagcgtcgacgactcgcaggtcgccgccgcccgcgccgacggctccgtcgagatt
tggctcgtctcccccggcgccgtcggatggcactgtcagctgacgattcatggagaccct
aacacgagcgtttcgtcgctcatttggtgccgggctggctcgaaaggcttgccttgtggg
cggttgttctcttctagcctcgacggctcagtttcgcattgggatctttttaatttgaag
cagacgactgttttggattctgtgggggtctcaatctttaatatggccgtggcaccctgt
gttaatgatacagagaatgggtttttgaatgataatgggggtgatcctgaaaccagtgat
agtgaaaccagtgacagcgaggatgattcagactcagacgatgatcatgcaccatcagtt
cttgtgaacccgcgcgtggcattagctggtggtgatggttttctgcaaatttacagtatt
aatgatgcagatgagtttgtatacactaaatcgctgcctagggtcaatggtagtgttttg
agtgtggcgtggagtcccgatgcaaagtttatatatgcagggagtactgatggcatgata
aggatctgggatgctagaggaggcattgaaaaacataggattacagttggactcggaggc
ttgggtagcggatctgaactctgtgtgtgggcgttactttctctgaggtgcgggaccctt
gtaagtgcagacagtactggaagtgttcagttttgggacagtcagcatggaactctactg
caagcacattcatatcacaagggtgacgtgaaagctctggcagctgctcccagccataat
cgggtgttctctgctggttctgatggtcaggttattctttacaagctctctagtgagacg
ctgggatctagtgttgggtcttctcctaatgtaatgaagaaatggatctacgttggttat
acaagagctcatacacatgatgttagggctttggcagtggctgtaccaatcagcagagaa
gatcccttaccagatcaaggtagaaaaagagcccgtcgtaaggacaagcctgttgatttt
ggttatcttaaatgggcacatttgggtgttcctatgcttatctctgctggtgatgacaca
aagctctttacctaccctgttaaggagttcacgcagttttctccacatgatatctgccct
gcacctcagagagtatccattcaactggcacctaatacagagttcagtcaaacatcattg
cttcttgttcaaggttctcattcgttggatatcttgcacgtacgagtaaaagctggtgcc
ttttttgatatggctcgtggctcttcaggaggcctagcctcaactaatgggctgtttcaa
attaagtcatctcggaagatcatttgcagcaccatatctaattcaggggtgttttttgct
tattctgaccatgtgaaaattagcctgtttgagttgaagaagtgtattcgatcaggaaaa
aaagaagtgaagtgtaaagttggcgaaagtgaattgactcttaataaaagagaacttcct
cgaaaactaccatttgctcattcgatggtttttagttttgattcttctcgcttgatgata
gcagggcatgatagaagaatatatgttgtggatgtacacagctcagagctagtgcatgct
ttttccccttgccgtgatttgcatgatcaagaactaccacctggtgagcctcccataaca
aaaatgtttacgagttctgatgggcagtggttggctgccatcaactgctttggagatgta
tatgtatttaatctggagatacagaggcagcattggttcatttcaagactggataatgcc
tctgtgacagctggaggtttttctccaagaaacaataatgttcttataatcacgacctct
tcaaatcaggtatatgcattggatgttgaggagagaaaattgggagactggtcgaagcag
cacacttatgttcttcccaagagatttcaagaatttccaggcgaagttattgggctctct
ttcccaccttctcctagtacaacatctgttattgtctatagtgccagggctatgtgcttg
attgactttgggatgcctattgatcgagacgatgaaagtgacatgataaatggtcaggat
ccagcattgaggaatttccaaagtaatgggaaattaaaacgcaagtggacagacagtcaa
actaagagtaaactctttggtaggaagaattttgaatttattccattcggagatccagtt
ttatttataggacatctttccaaaagttccgtgttgaaaatatacaaaccatggatggaa
gtggttagaaatttcgactctgcacctgtagacaaacatacttttgggacataa
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