Rosa chinensis (China rose): 112169890
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Entry
112169890 CDS
T06020
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112169890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rcn04121
]
112169890
Ubiquitin system [BR:
rcn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
112169890
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
112169890
NCBI-ProteinID:
XP_024162750
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Position
6:55476524..55480262
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AA seq
584 aa
AA seq
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MLKMERSFPEEVLEHVFSFLQSDGDRNSISLVCKSWYEIERWCRRRIFVGNCYAVSPRIL
ISRFPDVRSITLKGKPHFADFNLVPEGWGGYVYPWIAAMASAYPWLEEIRLKRMVVTDES
LELIAKSFKNFKLLVLSSCEGFSTDGLASIAANCRNLRELDLHESDVEDLSGHWLSHFPD
TYTSLVSLNIACLGSEVSFSALERLVGRCPNLRSLRLNRAVPLDRLSNLLNRAPQLVELG
TGAYSAELRSDVLSNLSSALSACKELKSLSGFWDVVPTYLPAVYSICPGITSLNLSYAII
QSPDLIKLVSQCPNLQRLWVLDYIEDVGLDALAASCKDLRELRVFPSDPFVAEANVSLTE
RGLISVSEGCPKLQSVLYFCRQMSNDALMTIARNQPNFTCFRLCIIEPRTPDYLTHEPLD
VGFGAIVEHCKDLRRLSVSGLLTDRAFEYIGTYGKRLEMLSLAFAGDSDLGLHHVLSGCD
NLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNVEVIDER
GHPESRPESCPVEKLYIYRSVAGPRFDMPGFVWTMDENPALRLT
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaatggagaggtcgttcccggaggaggtgctggagcacgtgttctcgttcctg
cagtcggacggcgaccggaactcgatctcgctggtgtgcaagtcgtggtacgagatcgag
cggtggtgcaggagaaggatattcgttggaaactgctacgctgtgagccctaggattttg
atcagtcggttcccagacgttagatccatcacgctcaaagggaagcctcacttcgccgac
ttcaatctggtcccggagggctggggtggctacgtgtatccctggatcgccgccatggcc
agtgcttatccgtggctcgaggagatcaggctcaagaggatggtcgtcaccgacgagagc
ttggagctgattgccaagtctttcaagaatttcaagctcctcgtgctttcgtcctgtgag
ggattcagtaccgatggccttgcctccattgccgctaattgcaggaatttgcgggagttg
gacttgcatgagagtgatgtggaggacctgagtgggcattggctgagccattttcctgat
acgtacacatcacttgtctcccttaacattgcatgcttgggctctgaggttagtttctct
gccctggagcgcctggtgggtaggtgtcccaacctgaggagtctcaggctcaaccgtgca
gtgccccttgacaggctatctaatctacttaaccgtgcgcctcagctggttgagttgggg
acaggggcctactcagctgaattgcggtctgatgtgttgtcaaacttatcaagtgccctc
tcggcctgcaaggaactcaagagcctttctgggttttgggatgtggtcccaacttatctt
ccagctgtgtattctatctgccctgggataacatcactgaatttgagctacgccattatt
caaagtcctgaccttatcaagcttgtcagtcaatgcccaaatttgcagcgcctttgggta
ttggattatattgaagatgttggccttgatgccttggcggcgtcttgcaaggatctacga
gagttgagggtgtttccatctgatccgtttgtggcggaagcaaatgtgtccttgacagaa
cgaggcctcatttctgtttctgagggctgtccaaagctacagtcagttctgtacttctgc
cgacaaatgtctaatgacgcattgatgaccattgccaggaatcaacctaactttacttgt
tttcgtctttgtattattgagccccgaactcccgactatctcacgcatgagccacttgat
gtgggattcggggccattgttgagcactgcaaagatctccggcgcctgtctgtttctggt
ctgttaactgatcgcgcatttgagtacattggtacttatggcaaaaggttggagatgctt
tcgctagcctttgctggagattctgacctgggacttcatcatgtgctatcggggtgtgat
aatcttcggaaacttgagattagggactgtccttttggtgacaaggctcttttggccaat
gctgcaaagctggagacaatgcgatccctttggatgtcttcttgctcagtgagttatgga
gcatgtaagctgctaggtcagaagttgccccggcttaatgtggaagttattgacgagagg
ggacacccggaatcaaggccggagagctgtcctgttgagaagctctatatatacaggtct
gttgctggtccaaggtttgacatgcctggctttgtttggaccatggatgaaaaccctgca
ttgaggctcacttga
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