Rosa chinensis (China rose): 112169946
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Entry
112169946 CDS
T06020
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112169946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcn03032
]
112169946
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112169946
DNA replication proteins [BR:
rcn03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
112169946
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
112169946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
TopBP1_BRCT0
ECT2_BRCT0
Ribosomal_S4e
Motif
Other DBs
NCBI-GeneID:
112169946
NCBI-ProteinID:
XP_024162832
LinkDB
All DBs
Position
6:complement(58432911..58440551)
Genome browser
AA seq
980 aa
AA seq
DB search
MLQTPPFKGANVFMSRKLVPPEIFDALHDALKLNGANVVLCSDPSRTGPDDYHVIASSDH
EKFEDLRAKGCQLLGPQCVFSCANEHRSLPKQKFTCCLALDGVNVLASGFEADEKVKIKN
LVTSMGGVLHTKTSLDVSFVIAKNVLAAKYKWAVNTLKKPVLTINWLYQCCNEHRIVPQE
SFRVLPVSGLTICVTRIPSDERKKIENLITENGGHYSAELTRKCTHLICDAPEGDKYKVA
RMWGHIYIVTRKWFDQSIARRACLSEESFPVQGGSLSSKKIVKGCFASQNSQSNCSGKLQ
AVPPSVVADSNFTAATCGGIVDSDLEATVSQTMLPTFSCAPLSCKEGDIKVPPLESKCEV
TLEDCVADDSQSEDNDLYLSECKISLVGFEASEMRRLVNIIRRGGGSRYMSFNDRLTHIV
VGTPSEIEKKEVRGFAALGVIHVVRATWLEDCDRDKKEIPVLQRHSACDILLPKGALTGM
SGMIQGKISTIPQRVPSDQLCGNRSMATGIDSLEKNREEVSEINRNDDMSVKEAVGSFDK
NKLPVIKDKSKIQLHDNTRGQQKIQHESGVQNGKPSSVFKGKFFRFSNSFPEDRRGEIIE
WVNQGGGLVIDAHFKQKAHFTIECHGVIPRSVDATRTTYVSSHWIRSCLEDGCLLDVSNH
ILYTPLPCRTPLPGFESFRFSVSQYEEKDRLLLRNLCFTLGAKFVEKLNKKVTHLLCKFT
SGSKYEAACKWGIHRITCDWLYECVKQNKVIALDQFYPKEVTAEDREAGLCTTSQYPTQD
FRMISVGNPSQCPSQSQDRSFSPPQAIGRRNDNIREEAKALSCNKKARVLEDVDQSGLLS
SGISSSIPSYTTGDKKVNAFGEVSQVVPDVASAIEDLLEQTTKIHDQNSPESIFASDCEL
LGQDLPGSHSVGGLSRHWLKSAGKKDDINNPPGKQTAGLYDQFSETQTDSQVVGYEEDLS
GRQMLIDRVRTRSSRTASSS
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgctccaaacgccgccgtttaagggcgccaatgtcttcatgtcgcggaagctggtcccg
ccggagattttcgatgcgcttcacgacgctctcaagctcaacggcgccaatgtcgtcctc
tgctccgacccctcgcgcaccggccccgacgactaccacgtcatcgcttcctccgatcac
gaaaagtttgaggatctcagagccaagggttgccaactgctaggtcctcaatgcgtgttt
tcttgtgcaaacgagcataggtcgctgcctaaacaaaagtttacttgttgcttagcattg
gatggtgtcaatgtacttgcctctggttttgaggcagatgaaaaggttaagataaagaac
ttagtaacatcaatggggggagttttacatactaaaacatctttggatgttagctttgtc
attgcgaagaatgtcttggctgcaaaatacaagtgggctgtaaatacattgaagaagcca
gttcttactattaattggttatatcaatgctgcaatgaacatcgcattgttcctcaagaa
tcctttagggttcttcctgtttctggtttgacgatctgtgttaccagaattccatcagat
gaacggaagaagattgaaaatcttatcacagaaaatggtggacattattctgctgaactt
acaaggaagtgcacacatttgatttgtgatgctccagaaggtgataaatacaaggttgca
cgaatgtggggtcatatttatattgtaactcggaaatggtttgatcaatcgattgctaga
agagcttgtctcagtgaagagtcctttccagttcaaggtggttctctatcttcaaagaag
attgtaaagggctgctttgcttcacaaaatagccaaagcaactgtagtgggaagttgcaa
gctgtaccaccatcggtggttgcagattcaaattttacagctgctacttgtggtgggatt
gtggattctgatctagaagctactgtctcacaaaccatgcttccaacattttcttgtgcc
cctttatcttgtaaagagggcgatatcaaagtccctcccttggaatcaaaatgtgaggtg
acccttgaagattgtgttgctgatgattctcagtctgaagacaatgacctgtacttgtca
gaatgtaaaatatcacttgttggcttcgaagcttctgaaatgcgtagattggttaatatt
attcgcagaggtgggggctcccgttatatgtcattcaatgacaggttgacacacatagta
gttggaactccttctgaaattgaaaagaaggaggtaaggggatttgcagctttaggcgtc
attcatgtggttagagccacctggcttgaagattgtgatcgtgataagaaagagatacca
gttctccagaggcacagtgcctgtgatatacttctccctaaaggagcactgacaggtatg
agtggtatgattcaagggaaaatttctactattcctcagagggtgccttctgatcagtta
tgtggtaataggagtatggcaactggaatagattcattggagaaaaatagagaggaggta
tcagaaataaataggaacgatgacatgtctgtgaaagaagcagttggatcattcgataag
aataaacttcctgtcataaaggataaaagtaagatccagttacatgacaacacaaggggt
caacagaagatacaacatgaatcaggtgttcaaaatggcaaaccatcttctgtatttaag
gggaaatttttccgcttttcaaattcctttcctgaagacaggagaggtgaaattattgaa
tgggtaaatcaagggggaggattggtaattgatgctcattttaaacagaaggctcacttc
actattgagtgtcatggtgtgatacccagatctgtggacgctactcgaactacatatgta
tcaagtcactggatccggtcatgtttggaggatggatgcttgctggatgttagtaatcac
attctctatactcctcttccctgccggactccgttgcctggatttgaaagctttcggttt
tctgtttcacaatatgaagagaaagatagactgttactaagaaatctgtgttttacactg
ggagctaaatttgtggagaaactgaataagaaggttacccatttgttatgcaagtttacc
agtggaagtaagtatgaggctgcttgtaaatggggaatacaccgaattacctgtgactgg
ttatatgagtgcgtgaagcagaataaagtcattgctcttgaccaattttatcctaaagaa
gttactgctgaagatcgagaggcagggttatgcactacaagtcagtatcctacacaagat
tttcgaatgatatctgtaggaaatccatctcaatgtccaagtcaatcacaagatcggagc
ttctcaccacctcaagccattggtcgtagaaatgacaatatcagggaagaagccaaagca
ttaagttgcaataaaaaggcaagagttttggaagatgttgaccaaagcggtcttctttct
tcagggataagttcaagtattccttcctatacaactggagacaagaaagtgaacgccttt
ggtgaagtatcccaggttgttcctgatgtagcgtctgctattgaggacttgttggagcag
acaactaagattcatgatcagaattcaccagagagtatttttgcatcggattgtgaattg
cttggtcaagacctgccgggttctcactccgtgggtggactatcgagacactggttaaag
agtgctgggaaaaaagatgacatcaacaatcctcctggaaaacaaactgctggcttgtat
gatcagtttagtgaaacacagaccgattctcaggttgttggatatgaggaagatttgtca
ggccggcaaatgcttatagacagagttcgaacgcgaagtagtaggactgcttcaagttcc
tag
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