Rosa chinensis (China rose): 112170032
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Entry
112170032 CDS
T06020
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112170032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112170032
Spliceosome [BR:
rcn03041
]
Complex A
U1 snRNP components
U1 related factors
112170032
Complex B
112170032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
112170032
NCBI-ProteinID:
XP_024162943
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All DBs
Position
6:complement(67410843..67421929)
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AA seq
995 aa
AA seq
DB search
MANNPQSSAAQYRPMVPTQQGQHFISSAPQQFQPVGQGQPLQYSQQMQPYPLRPSQPGHA
QPSSQALPMPYYQPRPVTSVPSHSQQPAPPFNNQMPGMPYPSSYMYAPPSFVQPQNNVSS
SSQFQPMSQEQAHAVPAAGQPWMSSSNHQGAAVVTPQQQPSQQPTSTPFPDPAVNVPNLT
QPSASDWQEHMATDGRRYYFNRSTRQSSWEKPLELMTPLERADASTVWKEYTSADGKKYY
YNKVTRESKWTIPEELKLAREQAQRELNQGTQSEMNLTPHAPPATASAEIHAGASSVGPS
TSSAQPGTVSSPVAVTPISAFSNPSPITPSGSLVAPGVQSSMATGSVGVQPAVVSVSPLP
ASNLGSTGVPSTLVNTNTKSVGNENQASQDIASSIDGAFTQDIEEAKKGMAVAGKVNVTP
SEEKAIDDEPLVYASKQEAKNAFKSLLESANVHSDWTWEQAMREIINDKRYGALRTLGER
KQAFNEYLGQRKKLENEERRIRQKRAREEFTKMLEESKELTSTIRWSKAVTMFENDERFK
AVERARDREDLYESYIVELERKEKEYAAEEHRRNISEYREFLESCDFIKVNSQWRKVQDR
LEDDERCLRLEKLDRLLIFQDYIRDLEKEEEEQKKMQKEQLRRIERKNRDEFRKLLEEHA
ADGTLTAKSQWRDYCMKVKDLPQYEAVALNTSGSTPKDLFEDVAEELEKQFLEDKARVKD
AMKQGQIAMVSSWTFEEFKAAVVKDIGSPSIPELNLKLAYEEILERAKEKEEKEAKKRQR
LADDFTKLLHTFKEITASSNWEDCKHLFEETQEYRSVGDENSGKEVFEEYITSLHEKAKE
KERKREEEKAKKEKEREEKEKRKDKERKEKEREREKEKGKERSKKDETDSENVDLTDSHD
HKEDKKREKDKDRKHRKRHQSSIDDVGSDKDEKEDSKKHRHSSDRKKSRKRAYTPESDSE
NRHRRHKREHRDGSRRNGGYEELEDGEVGEDGEIQ
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataaccctcagtcctcagctgctcagtatcgaccaatggtaccgacacagcaa
ggacaacactttatttcatcagctccccaacaatttcagcctgtgggacaaggtcagcca
ttgcaatattctcaacaaatgcagccgtatcctctcaggccaagtcagcctggtcatgct
caaccttcatcacaggctttacctatgccgtactatcagccgaggccagttacatctgtc
ccatcacactctcaacaacctgccccaccttttaataatcagatgcctggaatgccttat
ccttcatcatatatgtatgcaccgccttcttttgtccagccacagaataatgtcagttct
tcatcacagtttcagccaatgtctcaagagcaagcacatgctgtacctgctgctggacaa
ccttggatgtcctccagtaatcatcagggtgcagcagttgttacaccacaacagcagcct
agccagcaacctacaagcactcctttcccagatcctgctgtaaatgttcctaatctaaca
cagccgtctgcttctgattggcaagaacatatggcaactgatgggagaagatattacttc
aacagaagtactagacaatccagttgggagaaacctttagaattgatgactccactggag
agagccgatgcatcaactgtttggaaagaatatacttctgcagatgggaaaaagtattac
tacaacaaggttacgagggaatctaaatggacaattccagaggagttgaagctggctcgt
gagcaagctcaaagagaacttaatcagggaacacaatcagaaatgaatttgactcctcat
gctcctcctgcaactgcttcagctgaaatacatgctggagctagttcagttgggcccagc
acttcttcagcccaacctgggacagtctcgagtccagttgcagttacacccatctctgcc
ttctctaatccttctcctattacgccttcgggatcattggttgctcctggtgtacagtct
tccatggcaacgggttctgttggagttcaacctgccgtggtgagtgtgtccccactgcct
gcttctaatttggggagtactggagttccttctactttggtcaacaccaatacaaaatca
gtaggtaatgaaaatcaggcatctcaagatattgcaagttcaattgatggagcttttact
caagatattgaggaagcaaagaaaggaatggcagttgctggaaaagtcaacgtgactcct
tcagaggagaaagcaattgatgatgagccattggtgtatgccagtaagcaggaggcaaaa
aatgcattcaaatcactcctggaatccgcaaatgtccactctgattggacctgggagcag
gcaatgagagagatcattaatgacaaaagatatggtgctttaagaacactgggtgagcgg
aagcaggcttttaatgagtacctgggccaaaggaaaaagttggagaatgaagagaggcgt
atcaggcaaaaaagggctcgggaagaatttacaaaaatgctagaagagtccaaggaactc
acatcaacaattagatggagcaaagctgtaactatgtttgaaaatgatgaacggtttaag
gctgttgaacgagctagagatcgggaagatctctatgagagctacattgtagaacttgag
aggaaggagaaagaatacgctgctgaagagcataggaggaatatatcagagtacagggaa
tttctggagtcttgcgactttattaaggtgaacagccaatggcgtaaagttcaagatcgc
ttagaggacgatgagagatgcttgcgtcttgaaaagcttgaccgcttgctcattttccag
gactatattcgtgaccttgagaaggaggaagaggagcaaaagaagatgcaaaaggaacaa
ttgaggcggattgagaggaaaaaccgggatgagtttcgcaagctcttggaagaacatgct
gctgacggtactcttacagctaaaagtcagtggcgcgattactgtatgaaggtcaaagac
ttgccacagtacgaagctgttgcattaaacacatctggttcaacaccaaaagatttgttt
gaggatgttgctgaagaattagagaaacagtttttggaagataaagcacgggtaaaggat
gcaatgaagcaagggcagattgcaatggtttcctcatggacatttgaagaatttaaggct
gctgttgtgaaagatattggttccccatcaattccagagctcaacttaaagcttgcatat
gaggagatattagagagagccaaggagaaggaggaaaaagaagcaaagaagcgtcaacga
cttgctgatgacttcactaagcttttgcacacattcaaggaaataactgcttcttctaac
tgggaagattgcaaacacctttttgaagagacccaagaatacagatcagttggggacgag
aactctggaaaggaagtttttgaggaatatattacaagtttacacgagaaggccaaagag
aaagaacgcaagcgtgaggaggaaaaggcgaaaaaggagaaggaaagagaggagaaagag
aagcggaaggataaggagagaaaggagaaggagagagaacgtgaaaaagaaaagggaaag
gaacgatctaagaaggatgaaacagatagtgaaaatgtggacttaactgatagtcatgac
cacaaagaagataagaaaagggagaaagacaaagataggaagcatcggaagcggcatcaa
agttctattgatgatgtgggttctgataaggatgagaaagaggactctaagaagcacaga
catagtagtgaccgcaaaaaatcaagaaaacgtgcatatacacctgaatctgacagtgaa
aatcgacacagaagacataagagagaacatcgagatggttcccgcagaaatggtggatat
gaggaacttgaagatggagaggttggtgaggatggggaaattcagtag
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