Rosa chinensis (China rose): 112170554
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Entry
112170554 CDS
T06020
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112170554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112170554
03009 Ribosome biogenesis [BR:
rcn03009
]
112170554
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112170554
Ribosome biogenesis [BR:
rcn03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
112170554
Pre-60S particles
112170554
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IPO5
IBN_N
TPR_IMB1
HEAT_2
TOR1L1_N
TPR_DNAAF5
HEAT_MROH2B_1st
PDS5
Motif
Other DBs
NCBI-GeneID:
112170554
NCBI-ProteinID:
XP_024163653
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All DBs
Position
6:41916384..41929261
Genome browser
AA seq
892 aa
AA seq
DB search
MAAASAPWQPQKEGLTAICGLLEQQISPTSSADKSQIWHQLQAYSQNPEFHNYLVFILTR
AEGTSVEIRQAAGLLLKNNLRNAYNSMDPAYQQYIKSELLPCLGSPDRHIRSTVGTIISV
VVQLGGVMGWPELLQALVTCLDSNDVNHMEGAMDALSKVCEDIPQVLDSDVPGLPERPIN
IFLPRMLKLFQSPHSSLRKLSLGSVNQYIMLMPAALYASMDQYLQGLFVLANDPSSEVRK
LVCAAFVQLIEVRPGFLEPQLRNLIEYMLQVNKDTDEEVALEACEFWSAYCEAELPPEIL
REFLPRLIPILLSNMAYAEDDESLVDAEEDGSVPDRDQDIKPRFHSSRFHGSDGAEEDDD
DIVNVWNLRKCSAAAVDILSTVFGDEILPTLMAFVQAKLSNSDDETWKEREAAVLALGAV
AEGCIIGLYPHLNEIIAYLIPLLDDKFPLIRSISCWTLSRFSKFIVEGVGHQQGYEQFDK
VLLGLLRRILDNNKRVQEAACSAFATLEEEAADALAPRLETILQHLMCAFGKYQRRNLRI
VYDAIGTLADAVGGELNRPNYLEILMPPLIAKWQQLANSDKDLFPLLECFTSISQALGAG
FSPFAEPVFQRCISIIQSQQVAKVDPVASGVQYDKEFIVCSLDLLSGLTEGLGSGIESLV
SQSNLKDLLLHCCMDDASDVRQSGFALLGDLARVCPVHLRPRLPEFLDVAAKQLNTPKLK
ETVSVANNACWAIGELAVKVHQEISPIVLTVMSCLVPILQHPEALNKSLIENSAITLGRL
ACVCPELVAPHMEHFMQPWCIALSMIRDDIEKEDAFRGLCALVRTNPSGALSSLIYMCNA
IASWHEIRSEELHNAVCQVLHGYKQMLVNGAWEQCMSALEPQVKNKLSKYQV
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgagtgccccgtggcagccacagaaggagggcctcacggcgatctgtggg
ttgctggagcagcagatttcgccgacttcctccgctgacaagtctcagatttggcaccaa
ctccaagcctactctcagaaccccgagttccataattaccttgttttcattctcacacgc
gccgagggtacatcagtggagattcgacaagcggcggggttgcttttgaaaaacaacctt
agaaatgcatacaactccatggatcctgcataccagcagtatatcaagtcggaattactg
ccttgcttgggatcaccagataggcacatcaggtctacagtaggcaccattataagtgtt
gttgttcaactcggaggagttatgggatggccggaattactgcaagctcttgtaacttgt
ttggacagtaatgacgtaaatcacatggaaggtgctatggatgcattatccaaggtttgt
gaggatatacctcaggtgcttgattcagatgtacccgggttgcctgagcgccccatcaac
atattccttcctagaatgcttaagcttttccagtcaccacattcatccctcagaaagctt
tccctgggttctgtaaatcaatacattatgttgatgccagcggctttatatgcgtctatg
gatcaatatcttcaggggttgtttgtccttgctaatgacccttcttcagaagtgaggaaa
ttggtatgtgcagcatttgttcagctgattgaagttcgtccagggttcttggagccacag
ttgaggaacttaattgaatacatgttgcaagtcaacaaggacactgatgaagaagttgcc
cttgaagcctgtgaattctggtctgcatattgtgaggctgagttaccacctgagatctta
agagagtttttaccccgtctaattccgattttgctgtcaaacatggcttacgctgaggat
gatgagtcccttgttgatgctgaggaggatggctctgtcccagaccgtgatcaggatatc
aaacctcgttttcattcatcacggtttcatggatctgatggtgcggaagaagatgatgat
gatattgtcaatgtttggaatttacggaaatgcagtgcagcggccgttgatatcctctca
actgtgtttggggatgagattctcccaacactgatggcctttgttcaggccaagttgtcc
aacagtgatgatgaaacatggaaagaaagggaagctgctgttttggctctaggtgcggta
gctgaaggttgcattattggtctttatcctcatttgaatgagatcattgcgtatcttatt
cctcttttagacgataagtttccacttataaggagtatatcctgttggacactttcacgt
ttcagcaagttcattgttgagggtgttggacatcaacaaggttatgagcagtttgacaag
gttcttctgggtctcttaagaagaatattagataataacaagcgggtacaggaggctgct
tgctcagcttttgcgacacttgaagaggaggcggctgatgcgttggcaccacgcctggaa
actattttacaacaccttatgtgcgcttttgggaaatatcagagacggaaccttagaatt
gtatatgatgccattggaactctagcagatgctgtcggtggggagttgaatcgtcccaat
tatcttgaaattctgatgccaccattaattgcaaagtggcaacaacttgcaaattcagat
aaagatctgtttccgttgctggagtgctttacttctatttcgcaggcattgggtgccgga
ttctctccatttgcagagccggtgtttcagaggtgcataagcatcatacagtcccaacaa
gttgccaaggttgatccggtcgcttcaggagtccagtatgataaagaatttattgtgtgc
tctcttgatctgctttctggacttacagaaggtcttggtagtgggatagaaagtttggtt
tcacaaagcaatttgaaggacctgcttttgcactgttgcatggatgatgcttcggatgtc
cgacagagtggctttgctttacttggggatcttgcaagagtatgccctgttcatttgcgt
cctcgtttgccggaatttcttgatgttgcagccaaacaactgaatactcctaagctgaag
gaaactgtttcagtggcaaataatgcgtgttgggccattggtgagttagcagtcaaggtt
catcaagaaatttctccaattgttttgacggtcatgtcttgtttagtccccatactgcag
catccagaggcgctcaacaagtcactaattgagaacagtgctatcacgcttgggaggctt
gcatgtgtttgtccagagcttgtggctccgcatatggagcatttcatgcagccatggtgc
attgctttgtcaatgatacgtgatgatatagaaaaggaggatgcattccgaggtctatgc
gcattggttagaacaaatccatccggagcattgagttcactcatatatatgtgcaatgct
attgccagttggcatgaaataaggagtgaagagctacataatgcagtttgtcaggtgttg
cacggttataagcagatgcttgtgaatggagcgtgggaacagtgtatgtctgctttggag
ccacaagtcaagaacaagctatcaaaataccaagtgtaa
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