Rosa chinensis (China rose): 112170978
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Entry
112170978 CDS
T06020
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112170978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112170978
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112170978
Spliceosome [BR:
rcn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112170978
Complex C
U4/U6.U5 tri-SnRNP related factors
112170978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
AAA_22
HA2_N
ATPase_2
AAA_16
nSTAND3
AAA_23
Rad17
AAA_19
AAA_7
AAA_11
AAA_24
T2SSE
ABC_tran
AAA
IstB_IS21
AAA_14
AAA_25
Motif
Other DBs
NCBI-GeneID:
112170978
NCBI-ProteinID:
XP_024164005
LinkDB
All DBs
Position
6:18529347..18535334
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AA seq
717 aa
AA seq
DB search
MSSSSSSLQVGSEPSKSDPDKKRRRSEAWSQEDDEEIVPPHLKDQVKSIRSSADNDDDAA
AAKVDDDEQVQQFNSELFEKLQEDRKALPIYGFRDALLDFVQANQVVIIYGPTGCGKTTQ
IPQYLHEAGYSKKGMIGCTQPHGVVAMSAAFRVSKEVGVKLGHEVGYSIPSKDCTSEKTV
LRYMTDETLLHELYGEPDLISYSVLVVDGADERTLSTDILLGLLKDILRFRTKLKIVISI
RTTDHADKLSGYFNKARILKILLTRRMSYGYPKIEFMNAPIVDYLDVAIGTALQIHATEP
TGGDILVLLTDHEEVETAEEELKLKAAGLAEELIICPVHENLPAELQAKVFEPTPHGARK
VFLATVAINGAKYVIDPGFCKRKCYNPRTGIELMQVAHISRATALQRMVVSERGSKTAPA
KCFCLYTDHNYDKDFDKITVPEVQWTNLANAVLRLLHLGVNLSQFEFTDPPPTEALTKAL
RVLFILGAVNTEGELSRVGAQMAEIPLDHMLSRAVVASIEYKCSAEVISIVAMLSTGGDS
VFYRPQDKHTDADNARLHFHSGNVGDHIALLRVYNAWKEANFSTQWCHENYIRVRSMRRA
RHIRDKLEQLLEKVGLELTSNLVDLEPIKKAITTGFLPHSAKQQMNGSYRTVKEPDSPTI
RIHPNSGMAQVLPTWVVYHDLVPTTGEYMRQVTEIKPEWLVEIAPHYYRLEYVLDVV
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatcctcgtcttctctgcaagttggttcggagcccagcaagtcagatcccgat
aagaaaaggcgccggagtgaggcttggagtcaagaagacgatgaagagattgttcctcca
cacctgaaagatcaagttaaaagtataagaagttcggctgataatgatgatgatgcagca
gctgctaaagttgatgatgatgaacaagtgcagcaattcaattcggagctatttgagaag
ctccaggaggatagaaaagcactacccatttatggatttcgtgatgcattgctcgacttt
gttcaagcgaatcaggttgttattatttatggtccaactgggtgtggaaaaactacacag
ataccccaatatctacacgaggccggatatagcaaaaaagggatgattgggtgcacacag
ccacatggagttgttgctatgagtgctgctttcagagtttctaaagaagtgggtgtcaag
ctcgggcatgaggtaggatattccattccttctaaggattgcacatctgaaaagactgtt
ttgagatatatgacagatgaaacgttgttgcatgaactctatggtgaaccagatctgata
agctatagtgtgttggtggtggatggggccgatgagagaaccctctcaactgatatccta
cttggattgttaaaggatattcttcgatttagaaccaaacttaagatagtcatctccatc
cgaactactgatcatgctgataagttaagtggttatttcaacaaagctcgcattctcaaa
atcctactaacaaggcggatgagttatggttaccccaaaattgaattcatgaacgcacca
atagtagattacttggatgtagcaataggcactgcacttcaaatccatgcgacagaacca
accgggggagatattttggtcttactcaccgatcatgaagaggtcgaaacagcagaagaa
gaattgaagctaaaagcagctggcttggctgaagagctgattatctgccccgtacatgaa
aacctgcctgctgagcttcaagcaaaagtttttgagcccacacctcacggagccaggaag
gttttccttgccacagtggctatcaatggggccaaatatgtcattgaccctgggttttgc
aagaggaagtgttataatccaagaactggtatagagttaatgcaagtcgctcacatctca
agggcaactgcattacaaaggatggtggtaagtgaaaggggaagtaaaacggcccctgcc
aagtgcttctgtttatatactgatcataattatgacaaagattttgataaaatcacagtg
ccagaagtacaatggactaaccttgcaaatgctgttcttaggcttctgcatcttggggtt
aatttatcacagtttgagtttactgaccctccacctactgaagcattgacaaaagcctta
cgagtgttatttatactaggtgctgtaaatactgagggtgagctttctagggttggtgca
cagatggcggaaatccctttggatcatatgctgtccagggcggtagttgcttcaattgag
tacaaatgctcagctgaggttatttctattgttgccatgctttccaccggtggtgattca
gtcttctatcgaccacaggacaaacatacagatgccgacaatgcgcgattgcattttcat
tctgggaatgtgggggatcacattgcattgcttagagtttacaatgcatggaaagaggca
aatttctcaacacagtggtgtcacgaaaactacatacgagttagaagcatgaggagagca
agacatattcgggataagcttgagcagctattggagaaggtcggcttagagctcacctca
aatctagttgatttggagcctataaagaaggctattaccaccggtttcttacctcattct
gcaaagcagcaaatgaatggatcttatagaacagtcaaagagccagattcaccaactatc
cgtatacatcccaactcggggatggcacaagtgctcccgacgtgggttgtgtatcatgat
ttggtgcccacaaccggagaatatatgagacaggtaacagaaatcaagccggaatggttg
gttgaaatagctccgcattattaccggctggagtatgttctggatgtggtttaa
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