Rosa chinensis (China rose): 112171053
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Entry
112171053 CDS
T06020
Name
(RefSeq) protein CHROMATIN REMODELING 35-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112171053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112171053
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112171053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112171053
NCBI-ProteinID:
XP_040365263
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All DBs
Position
6:22175273..22181052
Genome browser
AA seq
1014 aa
AA seq
DB search
MSNGVPKKRNHSNFMALAQPVIDLSSNGEDNGRRRSSNVHQKIKLEPPPEHHQQVMDMEV
QYPNNLTALAPPAIVLSSDDEDNGSREPLHLYPKIVLEPPPPTEHDQRVIDMETKSSNNI
AAVGPSVVFLSSDDEDDESRMIFHEKVVLEPVDRLLKKSSMDSVEMNAQRKELETIPGLN
MGMHKDIKDGVQSTDHIWKDVDVGAAEDVAGLELIDCHGHDILVQDCLASKDHLEELKTL
AEKDVDIDGDRTSEKEFSDQSNSESIEDIQSIAPSTEVGTLVHENDMVVGEGNVEDDMKD
SGKINVEEDDRHDTEEDDENNIKEDDLSDIEEDDVNDNEEDDANDIEGEDLTDAWNEMTM
ALQCAKDIAVGPSADDPSSECGEECDHYFILKDDLGLVCRICGVIQKGIDTIFEFQYNKG
KRSTRTYVQEPRDANNTEPTESSSLGIKLTTGRDLMETEFSAHPSHRKHMKPHQVEGFNF
LCSNLLGDNPGGCILAHAPGSGKTFLIISFVQSYLARFPDARPLVVLPKTILDTWKKEFR
IWQVEDIPLHDFYTSKADKRSQQLNVLKQWVEQKSILFLGYQQFSTIMCDIGSSKTSDKC
REILQKSPSLLILDEGHTPRNDETNQFQALVRVQTPLKVVLSGTLYQNHVKEVFTLLDLV
RPKFLKLDTSREIVKRIMSIVRISGVRKQLKGGGDSAFFDLVEHTLKKDEDFKRKVAIVQ
DLREMTRKVLHYYKGDFLDELPGLVEFTLLLGLTSRQKAEFEKLKGLDKLRRMPVGSLVS
MHPELRYLSEKNPSTEKGCTVDNKTMDRFLEKLNFRDGVKAKFFLNMLALCESNDEKLLV
FSQYLLPLKLMERLAVKEMGWSLNKEIFVLTGDTNSKQKEWSMELFNTSPDAKVLFGSIR
ACGEGISLVGASRVLIMEVQLNPSVTRQAIGRAFRPGQKKKVHVYRLVAADSPEEDDHVL
SYTKEMISKIWFEWTESCGHQGYSGMKTVDLNDSGDMFLESQLLKEDIKVLQKR
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacggtgtgccaaaaaaacgaaatcactcaaattttatggcactagcacaacct
gtcattgaccttagttccaatggtgaagacaatggtaggaggaggtcatcgaatgtgcat
cagaaaataaagctggaacctcctccggaacaccatcaacaggtcatggatatggaggtt
cagtatccaaacaatcttacagcactagcacctcctgccatcgtccttagttctgatgac
gaagacaatggaagtagggagccacttcatctgtatccgaagattgtattggagcctcct
cctcctacagaacatgatcaacgtgtcattgatatggaaactaaatcttcaaacaatatt
gcagcagtaggaccatctgtggttttccttagttccgatgatgaagacgatgagagtagg
atgatatttcatgagaaggttgtcttggagcctgttgatagacttctaaagaagagctct
atggatagtgtagagatgaatgctcaaagaaaagagttggaaactatacctggattgaat
atggggatgcataaagacataaaggacggtgtacagagcacggatcatatctggaaagat
gtagatgttggtgcagcagaagatgtggctggtctagaactcattgattgtcacgggcat
gatattctggttcaggattgtttagcaagcaaagatcacctagaagagttgaaaacattg
gccgaaaaagatgtagatattgatggagacagaacttctgaaaaggagttcagtgatcaa
agtaattctgaaagtatagaagatatacaaagcatagctccaagcacagaggtcggaact
ctagttcatgaaaatgatatggtggttggggaaggtaatgtggaagatgatatgaaggat
agtggtaaaatcaatgttgaggaagatgatagacatgacacagaggaagatgatgaaaac
aatatcaaggaagatgatctgagtgatattgaggaagatgatgtaaatgataatgaggaa
gatgatgcaaatgatattgagggagaggatctaacagatgcatggaacgagatgacaatg
gcattacaatgtgccaaggatattgctgtcggtccttcagctgatgatccatctagtgaa
tgtggggaagaatgtgatcactacttcatcctgaaggatgatcttgggttagtgtgtcgt
atttgtggagttattcagaaggggattgataccatatttgagttccagtataataaggga
aaaaggagtacacgcacttatgtgcaagaaccgcgggatgccaacaacacagagccaact
gagagttcctcacttggaatcaagcttactactgggcgtgatttaatggaaacagaattt
tctgctcatccaagtcatagaaagcacatgaaaccacatcaagtagaggggtttaatttt
ctttgtagcaatttgttgggagacaacccaggtggttgcattcttgctcatgcccctggt
tcaggaaagacttttctgattataagttttgtccagagttacttagccaggtttcccgat
gctagaccacttgttgttctacctaaaaccattttggatacatggaagaaagagttccgg
atatggcaagttgaggacattcctttgcatgatttctatacttccaaggcagacaagcgg
tctcaacagttgaatgtattaaaacaatgggtagagcagaagagcatccttttcttaggg
tatcaacagttctctactataatgtgcgacattggcagtagcaagacatcggataaatgc
cgagaaattctgcagaagtcccctagtcttctcatattggatgaaggtcacacaccaagg
aatgatgaaactaatcagtttcaagctcttgtaagagtacagaccccactgaaagtagtt
ctctcaggaacactctatcaaaaccatgtcaaagaagtcttcactctcttagatcttgtt
cgtccaaagtttctgaaattggacacttcccgggagattgtgaagcggatcatgagcata
gtacggatatcgggtgtgaggaaacaattaaaaggtggaggagattcagcttttttcgac
ctagtagagcataccctcaagaaagatgaagactttaagaggaaggtagccattgtacaa
gatcttcgagaaatgaccaggaaggtgctccattattataaaggtgactttttagatgaa
cttcctgggcttgttgagttcacactactactcggcctcacttcaagacagaaagctgaa
tttgaaaaattgaagggattggacaagttaaggagaatgcctgttgggagccttgtctct
atgcatccagagttgagatatctttcagaaaaaaatccatcaactgagaagggctgcaca
gttgataataagaccatggatcgattcttagaaaagttaaatttcagagatggagtaaaa
gctaaattctttcttaatatgcttgcgttgtgtgaatcaaatgatgagaagctactggtt
ttcagccaatatctcctgcccctgaaacttatggagagattagctgtgaaggaaatgggt
tggagtctcaacaaggagatttttgtgttaaccggtgatacaaactctaagcaaaaagaa
tggtctatggaactctttaacacctcaccggatgctaaagtgttatttggttccattaga
gcttgtggggaaggtatctcgcttgtgggagcttctcgtgtccttattatggaagtccag
ctcaacccttcagtgactcggcaagcaatcggacgtgcatttcgaccaggtcagaagaag
aaagtgcacgtctatagattggttgctgctgactcaccagaggaggatgaccacgtgctc
tcttataccaaggagatgatatcaaagatatggttcgagtggactgagagctgtggacat
caaggctactctggtatgaagactgtagatctaaatgactctggtgatatgttcttggaa
agtcagttgttgaaggaagatataaaggttttgcagaaaaggtaa
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