Rosa chinensis (China rose): 112171467
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Entry
112171467 CDS
T06020
Name
(RefSeq) endoribonuclease Dicer homolog 3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rcn03036
]
112171467
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112171467
microRNA pathway
RISC loading complex
112171467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
dsrm
DND1_DSRM
SNF2-rel_dom
nSTAND3
Motif
Other DBs
NCBI-GeneID:
112171467
NCBI-ProteinID:
XP_024164418
LinkDB
All DBs
Position
6:48072011..48081985
Genome browser
AA seq
1719 aa
AA seq
DB search
MTEDSRDKGKGKLLVPGSPCQVFEIDSFTNGFLVLSSCTPIEVSRRLESHSHIIGGSSTY
LWKIKSSKLELEIASNSDMSLTALDISLEGSQSPHDIKHFVPRRYQVKVFEVAKRKNIIA
VLETGSGKTMIAVMLIKHIADQHIIKSIGHKKLIIFMAPTVHLVIQQYEVIKKSTTLEVG
VYYGAKGVDDWSPEYWEVEVNTHNIMVMTPQILLDALRNAFLKIEMICLMVFDECHRATG
NHPYTKIMKEFHHKSGDKPKIFGMTASPVIKKGVSSATDCEDQISQLESILDSQVYTVED
RTEIEEHVPSAVQICKFYDPTWLISVDLKAKMEALWSKFDASIMSKLQGPEKSEYEDIND
KIKMLRKRLSNDYMKILYCLDDLGIVCAYEAVKVCLENAPDVKEECTFYRESSLQCRYFL
DEVLNMISEFLQKGYILHTDLESDYIKAQKVGYISPKLHELLQIFHSFERDRQVLCLIFV
ERIVTAKVMQRYVKKLPCLSNFTASYLTGSTTSVDALAPKLQKEILESFYSGKVNLLFAT
DVVEEGIHVQNCSCVIRFDLPKTVRSYVQSRGRARKNDSQYIIMLERDNKKQRDHLFDII
RSEYSMTDTSRNRDPDGCNLRACNFEDANAYYVEATGASITPDSSVSLIYRYCEKLPGDR
YFIPRPTFHFRLFEGLHQCEITLPPNAAFQTLVGPMSRNGHSSKQLVCLEACKILHQMGA
LDDHLLPLVEVPLDNEVIVKSKELSAGAGTTKRKELHGMTCIRALSGTWGEKVDGASFEA
YKFEFSCNVDETYSGFVLLVEMKLDDDVGNTEVDLYLIAKMVKAYVSSCGKVHLSADQIK
EAMCFQEFFFNGLFGRLFLGSEAKGTERKFLLQTEIKSLWCSSYSYLLLPTEASDSSNKK
SWNIDWMGICSCANVVEFLRKHYSNGLENFKGGRGNILLSRTGSSMTDCKAENLVQFANS
SIDVNDLGDMVVLAIHTGRIYSVIEVVSSISAESPLEENADTASSDYTYVEYFKTTYGIV
LKYPRHPLLRLKQSHNAHNLLVDQGVSSPDGLVQEKQQAHVHMPPEILVSIDVRVDVLKS
FYLLPSLMCRLESLMLASQIRKEINGQSSNFYISSSLILEALTTLRCCENFSLERLELLG
DSVLKYAVSSYLFLKYPEKHEGQLTARRTRAICNSNLHKLGTKNKLQGYIRDGAFEPRRW
AAPGQLSRFPDPCQCGVDTLEVPLDSRFQTEKAVKVGKFCDKGHRWMNSKTIADCVEALI
GAYYVGGGLFAALHLMKWLSIDSETGPSFADEAITRASLRSYNPKTNELANLELKLSYEF
AVKGLLHEAITHASQQKLGASYCYQRLEFLGDSVLDLLTTQHLYRSHTDIDPGVWTDLRS
AAVSNENFAQAAIRQNLHLHLQHCSGLLRSHITEYERLLTEAEHSTSSVEDIKCPKALGD
MVESIAGAILIDTKLNLDEVWRVFKPILSPIVTPSSLQLHPLRKLSELCDSLGYFVKETC
TKDDTLVNVELSLQLEDVLLVGNGFDRSRKAAKHKAARQVLKALEKSIERREHYSDMDSD
HCSNLTDEDFSEPMNHGKQNMTTIQSSSESKTIDPTQSNDCSNEVLSHNIATPVIGPIDT
KKGEPRKSLFDLCKKLQWPMPAFTTTEQKSRTPIEFGEGSEKRIGFSSFQSKISLHIPNS
CTIVCTGDPRADKKTSMDSAVVSMLHELQRRRKLVILQS
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggattctcgagataagggcaaagggaagcttttggttcccgggtctccttgc
caagtatttgaaattgattcttttacgaatggcttcttagttctctctagttgtacaccc
attgaggtctctaggcgactagaatctcactcacacattattggaggaagttctacatat
ctttggaagatcaaaagctccaagcttgagctggaaatcgcctccaactccgatatgagt
ctcactgctcttgacatttcccttgaaggatcacaatctccccatgatatcaagcatttc
gtccccagaaggtatcaagtgaaagtgttcgaagtcgcaaagcgtaagaacataattgca
gtgttggaaactggttctgggaaaactatgattgctgtgatgctcatcaaacacattgct
gatcaacacatcatcaagtccattggccacaagaagttgataattttcatggccccaaca
gttcatcttgtcattcagcaatatgaggttataaaaaagtctacaactcttgaagtggga
gtatactacggagctaagggcgttgatgactggagtccagaatattgggaggtggaagtg
aatacacataatataatggtcatgacacctcaaattctcctggatgctttgcggaatgca
tttttgaagatagagatgatttgcttgatggtctttgatgaatgccaccgtgccactggc
aatcatccctacacgaaaataatgaaggaatttcatcacaaatcaggagacaagccaaag
atttttggaatgacagcatcaccagtcattaaaaaaggtgtctcatccgccacggactgt
gaggatcagatatcacaacttgaaagcatcttggattcccaggtttatacagtagaagac
aggacagagattgaagagcatgttccctcagcagtccaaatttgtaaattttatgacccg
acatggttgatctctgtggatttgaaagcaaaaatggaagctttatggtcaaagtttgat
gcttctatcatgtcaaagttgcaagggccagagaaaagtgagtacgaagacattaatgat
aaaatcaagatgctacgaaagcggttgtccaatgactacatgaaaattttatattgcctt
gatgatcttggtatcgtatgcgcatatgaggctgtgaaagtctgtctggagaatgcccct
gatgtcaaagaggagtgcacattttatagagaaagctctttgcaatgcagatattttctt
gatgaagtcttaaatatgatcagtgaatttcttcaaaaaggttatatacttcatacagat
cttgagtcagactatataaaggcacaaaaagtgggatacatatctccgaagttacatgaa
cttcttcaaattttccactcatttgagagggataggcaagttctgtgccttattttcgta
gagagaattgtcacagccaaagtaatgcaaagatatgtgaagaaactgccatgtttatct
aatttcacagcttcatatttgaccggaagtaccacatcagttgatgcacttgcaccgaaa
ttgcagaaggaaattttggagtcattttacagtgggaaggtcaatctactatttgccact
gatgtagttgaagagggaattcatgtccagaactgctcctgtgtgatccggtttgatctt
cccaagacagttcgtagctatgtccagtctcggggacgagcacgaaaaaatgattcccaa
tatatcataatgcttgaaagggacaacaagaagcaaagagaccatctctttgacataatc
aggagtgagtactcaatgacagatacgtcgagaaatcgagatcctgatggatgcaattta
agagcttgtaactttgaagatgcaaatgcatactatgtagaagctactggagcatcaatt
actccagactctagtgtcagcctcatatatcggtactgtgaaaagctccctggagatagg
tactttattccaaggccaacttttcatttcagactatttgaagggttgcatcagtgtgaa
ataacattacctccaaatgcggcatttcaaacactagttggtcctatgagtagaaacggt
cattcatcaaagcagcttgtatgcttggaagcttgtaaaatcctgcatcaaatgggtgct
ttggatgatcatcttctcccacttgtcgaagtgcctcttgataatgaagtgattgtgaaa
agcaaagaattatctgcaggtgctggaactacaaaaaggaaagagttacatgggatgact
tgcattcgtgcattaagtggaacttggggagagaaagttgatggtgctagttttgaggcc
tacaaatttgagttctcctgtaatgttgatgagacatattcaggattcgtactactagtc
gagatgaaacttgatgatgacgtgggaaatactgaagtggatctctacttaattgcaaag
atggtcaaagcttacgtttcttcatgtggaaaggtgcatctcagtgcagatcagataaag
gaagccatgtgctttcaggaatttttctttaatggtttgtttgggagattatttcttgga
tccgaagcaaaagggacagaaagaaaatttctacttcagacagaaataaaatcactatgg
tgctcatcgtacagctatttacttttaccgactgaggcatctgacagttcaaataagaaa
tcttggaacatagattggatgggaatctgttcctgtgctaatgtggtggagtttcttagg
aaacactattccaatggtcttgagaatttcaaaggcggtagaggaaatatattactttct
aggactggttcatccatgacagattgcaaggctgaaaatttagtccagtttgctaatagt
tcaattgatgtcaatgatcttggagatatggtagtgttggctattcacacaggaagaatc
tactctgttattgaagttgttagtagcatttctgctgagagtcccttggaagaaaatgct
gatactgcctcatcagattatacttatgttgagtacttcaaaacaacgtatgggattgta
ctcaagtatcctagacatcctctattgcggttgaagcaaagtcataatgcacataacctg
cttgttgatcaaggtgtgtcatcaccagatggtctagttcaagaaaagcaacaagctcat
gttcatatgccacccgaaatcttagtcagtattgatgttcgagttgacgttctaaaatca
ttttatttactaccatcactaatgtgtcgtctggagtccctaatgttagctagccagatc
aggaaagagatcaatggccagtctagcaacttttatatatcaagctcattgattctagaa
gcactcacaacacttagatgctgtgaaaatttttcattggagcgtttggagttgcttgga
gattcagttctcaaatatgctgtgagctcctacctctttcttaaatatcccgagaaacat
gaaggacaattaactgctcgacgaacaagagctatttgcaactcaaacctgcataaacta
ggaacgaaaaacaagttacagggatacatacgagacggtgcatttgaaccacgacgttgg
gctgctccagggcagctttctagattcccagatccatgtcaatgcggagtggatactttg
gaagtgcccttggacagtagatttcaaactgaaaaggctgttaaggttggaaaattctgt
gataaaggtcacagatggatgaactcaaaaaccattgctgattgtgttgaggccctcata
ggagcttattatgttggtggaggattgtttgctgcacttcatttgatgaagtggctcagc
attgattctgaaactggaccctcatttgctgatgaagccattacaagggcatcacttcga
tcctacaatcccaaaactaatgaacttgctaacttggagttgaagcttagctatgaattt
gcagtcaagggcttgttacatgaggccatcacacatgcttctcagcaaaaactaggtgcc
agctactgttatcagaggcttgaatttcttggagactctgtgttggatctgctaactaca
cagcatctctatcgcagccacacagatattgatcctggagtgtggactgatttgcggtca
gctgctgttagtaatgaaaactttgctcaagctgctattagacaaaaccttcatctacat
cttcaacattgctctgggttacttcggagtcacataaccgagtatgagaggttgcttaca
gaagctgagcacagtaccagctcagtggaagacattaagtgtccaaaggctcttggtgac
atggtggaaagtatagcaggagctatactaattgatacaaagcttaatcttgatgaagta
tggagggtttttaaaccaatattgtctccaattgtgaccccttctagtcttcaattgcat
ccgctacgtaaactgtctgaattatgtgattcacttgggtactttgtgaaagaaacatgt
actaaagatgatacactagtgaatgtggaactaagtttgcagctggaagatgttcttttg
gttggaaacggctttgaccggagtagaaaagctgcgaaacataaggcagctcgtcaagtg
ttgaaggcgctcgagaaaagcatagaaaggagagagcattattctgatatggatagtgac
cactgcagcaacctaactgatgaagatttttcagagccaatgaaccatggaaagcagaat
atgacaacaattcaatcatcttcagagtcaaaaacaatagatcctacccaatccaatgac
tgttctaatgaagtcttaagtcacaacattgcaaccccagttattggtccaatcgatacg
aaaaaaggtgaacctcgaaaatctctctttgatctatgtaagaaattgcagtggccaatg
cctgcattcacaacaacagagcagaagtcaagaactccaattgaattcggtgagggttct
gaaaagagaataggtttcagcagctttcaatcaaaaatcagcttgcacatacccaactct
tgcactattgtatgcacaggagatcctagagccgataagaagacttccatggattctgca
gttgtttccatgcttcacgagcttcaacgacggagaaaacttgtcattctccagtcttga
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integrated database retrieval system
