Rosa chinensis (China rose): 112171603
Help
Entry
112171603 CDS
T06020
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn00040
Pentose and glucuronate interconversions
rcn01100
Metabolic pathways
Module
rcn_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112171603
Enzymes [BR:
rcn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
112171603
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Pect-lyase_RHGA_epim
NosD
Phage_Gp111
Motif
Other DBs
NCBI-GeneID:
112171603
NCBI-ProteinID:
XP_040364522
LinkDB
All DBs
Position
6:complement(55365846..55367780)
Genome browser
AA seq
644 aa
AA seq
DB search
MLVAGFLKGLGIYTLVHSYKYTNILQAASKSTSYQSLAILFRILIMVLKSMNILAILLLS
FLASTAVADQSNVFDVTSSKYGGKPNSDISKALTMAWTDACASTSTSTVLVPRGTCKLLQ
AKFEGPCKAPIQFQLQGTLQAPKDRSQLDDFWISFNNIDMLTLSGGGTIDGQGALSWKEN
HDSTPVDIWFQTVNNSTISDIASIDSAKFHISVHGCNNVTFQRLTITAPEDSPNTDGIHI
SSSTKITVSDSYIATGDDCVSIGDGSNQILVSNITCGPGHGISIGSLGKYPDEQPVVGVT
VKNCTLTGTSNGARIKTWPDSPATSVACNILFQDMVMVNVKNPVLIDQNYCDKGKSCKQI
IPSKVQISNVTFKDIRGSSSSPVAVKLDCSHSAPCQNVELSDIDLTYSGDKKDEITSECN
NVKPRITGMTRALACANLGDIPIDNSPPPSTSPPLPPPLPASPPLPPFSPPLSPPAPFVL
PSQPPSSPPLSPPEPFISPSPLPSVPPLLPPPFVLPSPPPSSLPLSPPAPFVLPPPPPSL
PLLLPPPLVSPSPPPFLLPLSPPPFVSPPLPPMVDTPPPPTVASDDSSPPIIMVYGYPYP
LSHTDDGGFGPTSSAAGSILGQKPTVKVMVLSSALALWLLHALL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttggtggctggatttctaaaaggattgggaatttatactcttgttcattcctataaa
tacacaaacatcctacaagcagctagcaagagtacttcataccagagtcttgcaatctta
ttccgcatcctcatcatggttctgaaatcgatgaacattttggcaatacttttgctctca
tttttagcatccaccgctgtagctgatcaatccaatgtcttcgatgtgacaagctcaaaa
tatggtggaaagcccaactcggatatttcaaaggcattgacaatggcatggacagatgcg
tgtgcatcaacgtcaacgagtactgtccttgttccgaggggaacatgcaagttattacaa
gcaaaatttgaaggtccttgcaaggctcctattcagtttcagctccaaggaacattgcag
gctccgaaagaccggagccaactcgatgacttttggatttcctttaacaacatcgacatg
ctcaccttgtccggcggtggaactatcgacggacaaggagccctttcttggaaggagaat
catgactctactcccgttgatatttggttccaaactgtcaacaattccacaattagcgac
atagcttcgatcgacagcgcaaagttccacattagtgttcatggctgcaacaacgttacg
ttccaacggctcaccatcacagcacccgaagacagtcctaacaccgacggaatccacatc
tctagttcgaccaagatcacagtctccgactcctacattgcaaccggtgacgattgtgtt
tcaattggcgatggctccaaccaaatcctagtgtccaacattacttgcggaccaggtcat
ggaataagcataggcagtctaggaaagtatccagacgaacagccggtggtcggcgtcacg
gtcaagaactgcacgcttaccggcacaagcaacggcgcgagaatcaagacgtggcccgat
tctccggcaacaagcgttgcttgtaatatactcttccaagacatggtcatggtgaatgtg
aagaaccctgtcctcatcgaccagaactactgtgacaaaggcaagtcgtgtaagcaaata
attccatccaaagtccagatcagtaacgtgacgttcaaggatatcaggggctcgtcttcg
tctccggttgccgtcaagctcgactgtagtcacagcgcgccgtgccagaatgtggagctg
tccgatattgatctcacgtacagtggagacaaaaaagacgaaatcacgtccgagtgtaat
aatgtcaaaccgagaattaccggcatgactagggctcttgcttgtgccaatctaggtgac
ataccaatagataattcaccgccgccgtcaacttcaccgcctcttccaccgccgctgccg
gcttcacctcctcttccaccattttcgcctcctctttcaccgccggcgccatttgtttta
ccttctcaaccaccatcttcacctcctctttcgccgccggagccatttatttcaccttca
ccgctaccatctgtacctcctcttttgccgccgccattcgttttaccttctccgccacca
tcttcactgcctctttcgccgccggcgccatttgttttacctccaccgccaccatcttta
cctcttcttttgccgcctccattagtttcaccttctcctccaccatttttactgcctctt
tcgccgccaccattcgtatcacctcctcttccgccgatggtggacacacctcctccccct
acggtagcatcagacgattcgtctccgccgataataatggtgtatgggtatccatatcct
ctgtctcatactgatgatggtggttttggaccaacatcgtccgccgccggcagtattttg
gggcaaaaaccgacggtcaaagtgatggtgcttagttccgccctggctttgtggttgctg
cacgccttgttatga
DBGET
integrated database retrieval system
