Rosa chinensis (China rose): 112172068
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Entry
112172068 CDS
T06020
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112172068
Spliceosome [BR:
rcn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112172068
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_7
TPR_12
Motif
Other DBs
NCBI-GeneID:
112172068
NCBI-ProteinID:
XP_024165007
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All DBs
Position
6:complement(50103241..50111305)
Genome browser
AA seq
828 aa
AA seq
DB search
MGDSETVVAQTNAMMGYSSAAYTTTGYSDSSSNIAQEATTEISAPPAPVDATHPMPGDGN
AYSVASDSLMQESHSYATYEAQPAVGVADAGGNVANSEHETMASLQAANYDSTANGVATS
GVGTVSSVGNGDASDNMAGSLDTQQYVDCSAMSAEEDRLWNIVRANSLDFNAWTALIEET
EKVAEDNILKIRKVYDAFLAEFPLCYGYWKKYADHEARFGVIDKVVEVYERAVQAVTYSV
DIWLHYCTFATTTFGDPDTIRRLFERGLAYVGTDYLSFPLWDRYIDYEFMQQAWGQLVVI
YSRILENPNQQLDRYLNSFKELAGSRPLSELRTAEEAAAAAAAASATSEDGVQANGEDAQ
PDGAEPSPAILTEAEELEKFIAIREEMYKKAKEFDSKIINFETAIRRPYFHVRPLNAAEL
ENWNNYLDFIEREGDFNKVVKLYERCLIACANYPEYWIRYVLSMEASGSLDLANNALDRA
TQVFVKRQPEIHLFAARFKEQSGDIPGAQAAYQLVHSEISPGLLEAIIKHANMEHRLGNM
EAAYSLFEQAIAIEKGKEHSQTLPVLFAQYARFAYLVSLNAEKARAIFLEAVEHVQLSKA
FLEALIHFESIHSLPKQIDYIDSLVVKFVESNSENPNFASVADREELSCIYLEFLNLFGD
AQSIKKAEDRHAKLFLLHRSTTSELKKRQAEDYLSSDKTKMAKSYSGVPSPAQSIMGAYP
NAQNQWAAGYGVQPQAWPPATQAQGQQWTPGYTQQAYNAYGGYQQVPAAVPQTAAYPATY
PATYPAQPAAFPPQSYAQPAAAATAVAAVAPAQQPAPAQQAYYGNYYQ
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtgagactgttgttgctcaaacaaatgcaatgatgggatattcatcagca
gcctatactacgacaggttattctgattccagctcaaatattgctcaggaggctaccaca
gaaatttctgctcctcctgctcctgtagatgcaacccatccaatgcctggtgatggaaat
gcatattctgtggcttccgattctctcatgcaagaatcacattcttatgcaacatatgag
gctcaaccagctgttggtgttgctgatgctggtgggaatgttgctaacagtgaacatgaa
accatggcatcattgcaagctgccaattatgattctactgctaatggtgttgctacttct
ggggtgggaactgtttcatctgttggaaatggagatgcttcagacaacatggctggatct
ctggatacacaacaatatgtggactgttctgctatgtctgccgaagaagatagactatgg
aacattgttagggctaattctttagattttaatgcctggactgctttaattgaagagaca
gagaaggttgcagaggataacatattaaaaattcgaaaagtttatgatgcttttctagca
gagtttcctttgtgttatgggtattggaaaaagtatgcagatcatgaggcgcgttttggt
gttattgataaagttgtggaggtttatgagcgagcagttcaagctgttacctattcagtt
gacatttggttgcattactgtacatttgccacaactacttttggagatccagacactatc
agaaggctttttgagcgaggattagcgtatgttggaacagattacttgtcctttcctctt
tgggacaggtacattgattatgaatttatgcagcaagcatggggccagcttgttgtgatc
tactcacgaatattagagaatccgaaccaacaactggatcgatatttaaacagttttaag
gagttagctggaagtcggcctctctcagaattgagaactgctgaagaagctgctgctgca
gcagcagcagcaagtgccacttcagaggatggtgtacaagcaaacggggaagatgctcaa
cctgatggtgcagaaccatctcctgctatcttaacagaagcggaggagttggagaagttt
atcgccattcgagaagagatgtataaaaaagctaaagagttcgattctaagataattaat
tttgaaacagctattaggaggccttactttcacgtgaggcctcttaacgctgcagagctt
gaaaattggaacaactatcttgactttattgaaagggaaggtgactttaacaaggtggtc
aagttatatgaaagatgcctgattgcttgtgctaattatcctgaatactggattcgttat
gtcctaagtatggaagctagtggaagtttggatcttgccaataatgctcttgatcgtgca
acccaggtctttgtgaagagacaaccagagattcacctttttgctgctcgcttcaaagag
caaagtggagatatccctggtgctcaggctgcctatcaactcgtacattctgaaatttca
cctggtcttctagaagcaatcattaagcatgcaaacatggaacaccgtctgggaaatatg
gaagctgcctactccttgtttgaacaggccattgccattgaaaaaggaaaggagcattct
cagaccttacccgtgctgtttgctcaatacgcacggttcgcatacttggtatctttgaat
gctgaaaaagccagggctatctttcttgaagcggtcgagcatgttcaattgtcaaaagca
ttcctcgaggccctgatacatttcgagtcgatacattcgttgccaaagcaaattgattac
atagattccttggttgtgaagttcgtggagtccaactcagagaaccccaattttgcgagt
gttgctgacagagaggagttatcttgcatctatttggagtttctaaatctctttggggat
gcacagtctatcaagaaggctgaggatcggcatgctaagctctttttacttcataggagc
accacttcagaattgaaaaaacggcaagctgaagattacctatcttctgataaaacaaag
atggcaaaatcatactctggtgttccttcacctgcccagtctattatgggagcatatcca
aatgcacaaaatcagtgggcagctggttatggtgtgcaacctcaagcttggccaccagct
acacaagcacagggacaacaatggacccctggttatacccaacaggcatacaatgcatat
ggtggttatcagcaagtacctgctgcagtgccacagactgctgcttatcctgctacatat
cccgccacatatcctgctcagccggcggctttccccccacaaagctatgcacagccagca
gccgcagctactgcagtagcagctgtagcaccagctcagcaacctgctccggctcaacag
gcgtattatgggaattactaccagtaa
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