Rosa chinensis (China rose): 112172126
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Entry
112172126 CDS
T06020
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 isoform X1
KO
K28108
shortage in chiasmata 1
Organism
rcn
Rosa chinensis (China rose)
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rcn03036
]
112172126
Chromosome and associated proteins [BR:
rcn03036
]
Eukaryotic type
Meiosis-specific proteins
Others
112172126
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
112172126
NCBI-ProteinID:
XP_024165091
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Position
1:complement(64276958..64283063)
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AA seq
1402 aa
AA seq
DB search
MRTRFFNIDYFTPTPLQTLETLTVLHLPIPNLPPHPNLSTSNVLQNLRLDPVLQVSLQIE
QLPITAALSKFFSDVLPQNLPVDIADFEAPKRRSFGSGSSAVRVSEQEADVLRKEKGLQN
RIAAGSESPETEFQKEDRDGDSDALQCEVLQFETQELDVFLENAYIYEKDEIPILSEVPE
ETLNLTMQYPLDIHESVHIVEDLKSEYPMDQNAYSFEDDGSCQDQMPSYQIHFPMLEANE
IPLQNLTALSMEDELSSVYENIEPQHLAQSDNLNGKELLGSKEYGMLELLSDNCLSKPCA
GSGLGFLDIPPEMDLLSMVEMSQIQGNIIYQGASIGSRFQSACPVVFQEFQILDLDSSLL
FEDLFKAQTANEPETCDWMFNGDKNFNNLIVSPELALVDDTFKSLPVPVLNDNERMSSSY
VIIEEKLTDVKPQPLSASDRIYLDWHLLEKDSTCHDYSCQKKMLEDMNPLSIGSYWDSFD
DGKFYDLVFSDDAVENTEEMELQVFLSDAIPMLAGHLGDASTRLSCHSCDNFPLTKTAEH
IDKKSAVDGLNKDESKEFQELLSDGIDIHTGHIGDASTKLSDGNFLQPKNRQQREKKGAD
RASLLFKSMSQFNDIDFFLNPRTVSTAGNSDCAVTAVDKIASCTKGEQSHSICAKVEHGN
EQKSKELLNSFPCQEEYNMRSKEDWDEVEASSIPPPIPSMPFAMEADYIQQSIMSFPETV
IVVNTQNLDKEMIVSRRSTYQKILAMEKKGAQVVERDSELPVDIILSPAVCLVWYDCRNI
GKKATSLDEASSCLPLCIENIATNVLTLLSTTFSSCILVFEGDTSFQSTVMESSDGLYAA
AASLGIDLQLFNSYSSELADEIILSCIEQATKSIRGVFPQMPESESLAESFLTKFPSVNA
LSAHAILSSGASLIEFLKWSHEKRIHAIQKYHVPDESIRLFSALCRYGERGDSKSIMTDC
SSSVSSGPDSGRYNLNVSERKRRKYNCSPDKYDIRMNDSLHLEPINIPTDAISDLPAASK
LHYSCMSKSPHIIDEFRKPRFTHNDLFDQEQVLDTAMMKNPFRVPEQYDSRISKEPQLLS
GTKRSLFSLKDKISGQKQGPNGPMMNKFDFRDLKNSENLHEDIKGEVIDLTDSPVFDVDF
SSIANSMEFSSLMPELEMDTTRKYKAARKLSFGSSSHRTFPTVAEIDSSTTIWGPVKEPR
QSSQVGANNYADTEIENDVFPSRQHNNFLEESFRQRSSGVSQRIHLHENDISAYGGTQLS
NALHSGTPQQNSPWTIEFLNKIKEKSRLRQQSFPRDLSSPILGYSGNAPKVNKRRSPSIL
EFFKYEGGNTPRKLPERKRQKRPVQRSSKIEKSSAFPLTGFTPADKRARQTLSFATNKSG
SQTKLVWSDGANGPSRKFQSRI
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgcttcttcaacatcgactacttcacccccactccactccaaaccctagaa
accctaaccgtcctccacctccccatccctaacctccctcctcaccccaacctctccact
tccaatgtcctccaaaacctacgcctcgatcccgtcctccaagtctccctccaaatcgaa
cagttgccgatcaccgccgcgctctccaagttcttctccgacgtcctccctcagaacctc
cccgtcgacattgcggacttcgaggctccgaaacggcgcagtttcggttccggcagcagt
gctgttcgggtttcggagcaggaagccgatgttctcagaaaagagaagggactgcagaat
cggatagctgccggttcagagtctccggagactgaatttcaaaaagaggatagagatggg
gatagtgatgcactccagtgtgaagtactccaatttgaaacacaagagctggatgtattc
ttggaaaatgcttacatttatgagaaagatgagatcccgattctttctgaagttccagag
gaaactctcaatcttacaatgcagtatcctttggatattcatgaatcggtgcatatagtt
gaagacttaaagtcagagtatcccatggatcaaaatgcttattcattcgaagatgatggt
tcttgtcaggaccaaatgccctcttatcagatacattttcctatgttagaagcaaatgag
atacctctgcaaaatttgacagctctgtctatggaggatgaactttcttctgtttatgaa
aatattgagccacaacatttggctcaaagtgataacctaaatggcaaggagcttttgggt
tcaaaggaatatgggatgttagagcttctttcagataattgtctatcaaagccgtgtgct
ggatctggcctcgggttcctcgacattccccctgagatggacttgttaagcatggtggag
atgtcccagattcagggaaacatcatatatcaaggggcaagcataggttcccgtttccag
tctgcatgcccagttgtttttcaggaatttcagattcttgatttggactcatccctactt
tttgaagacctctttaaagcacaaacagcgaatgaaccagaaacttgtgactggatgttt
aatggagacaagaacttcaacaatttgattgttagtcctgagctagccctggttgatgat
acattcaaatcattgcctgtacctgttctaaatgataatgaaaggatgagttcatcgtat
gttattattgaggaaaagcttaccgacgtaaagccacagccgctatctgcatcagatagg
atttacttggattggcatcttcttgagaaagatagcacctgccatgattattcctgtcag
aagaagatgttggaggatatgaatccgctcagcattggttcctattgggattcatttgat
gatggaaagttctatgacttggttttctctgacgatgctgtagagaacacagaagaaatg
gaattacaggtttttctttctgatgccattcctatgcttgctggtcatcttggagatgct
tcaaccagattgtcttgtcactcttgtgacaattttccactgacaaagacagcagagcat
atagataaaaaaagtgctgtagatggattaaacaaagatgaaagcaaggaatttcaggag
ttgctttctgatggcattgatattcatactggtcatattggagatgcttcaacaaaattg
tctgatggcaattttctacagccaaaaaatagacagcagagagagaaaaagggtgctgac
agggcttcgttgcttttcaagtctatgtcacaattcaatgatattgactttttcttgaat
cctcggacggtctctacggctggaaatagtgattgtgcagttacggcagttgataagatt
gcttcatgtaccaagggtgaacaatctcattctatatgtgctaaagttgagcatgggaat
gagcagaagtcaaaggaactcttgaacagttttccgtgtcaggaagagtataatatgaga
tctaaagaggattgggatgaagttgaagctagcagtatccccccacctattccttctatg
ccatttgcaatggaagctgactatattcagcagagcatcatgtctttccctgagacggtc
attgttgtaaacactcaaaatctagataaggaaatgatagtctccagaagaagtacttat
caaaaaattcttgcaatggagaaaaaaggtgcacaagtcgtagaacgtgattcagagcta
ccagtggacattatactcagtcctgcagtatgtttagtgtggtatgactgcagaaacatt
ggaaagaaagcaacttctcttgatgaagcttcttcatgcttacctttgtgcattgagaac
atcgccacaaatgttttgacattgctgagtactactttcagtagctgcattctggtcttt
gaaggagacaccagcttccagtccactgtaatggagtcctcagatggactttatgctgca
gcagcaagcctgggaattgatttgcagctgttcaactcctattcatccgagttggctgat
gagattatattgagctgcattgaacaagccacaaagtcgattaggggcgtatttcctcaa
atgcctgaatcagaatctcttgcagaatcattccttaccaagtttccttcagttaatgct
ttgtcagctcatgcaatactgtcttctggagcgtctctcattgagtttcttaaatggtct
catgaaaagaggattcatgcaatccaaaagtatcatgttcctgatgaaagtatcagacta
tttagtgctttatgcagatatggtgaacgtggagattctaaatcaataatgacagactgc
tcctcttcagtgtcttcagggccagactcaggaagatataacttaaatgtttctgaaaga
aaaagacgaaagtacaattgtagtcctgacaaatatgacatacgaatgaatgactccttg
catctggagccgataaacatacccactgatgccatttcggatcttcctgcagcttccaag
ctacattattcctgtatgtcaaaaagccctcacataattgatgagttcagaaagcctaga
ttcactcacaatgatttgtttgatcaagaacaggttttggatacggctatgatgaagaat
ccttttagggttcccgagcaatatgattctcggatctccaaagagcctcagttattaagt
gggacaaaaaggtcccttttttctttgaaggataagatatcaggtcagaaacagggacca
aatgggcctatgatgaacaaatttgatttcagagacttgaagaactctgaaaacctgcat
gaggatataaaaggagaagttattgatctaacagatagtcctgtatttgatgtggacttt
tcttctattgccaactccatggaattctcatctttgatgcctgagcttgaaatggatacc
acaagaaagtacaaagctgcaagaaagttgtcttttggttcaagcagtcaccgaactttc
ccaacagttgctgaaatagactcgagcacaactatttggggtcctgtaaaggaaccgaga
caaagttcgcaagttggagccaacaattatgcagatacggagattgaaaatgatgttttt
ccctcaagacaacataacaatttcttagaggagagtttcaggcagaggtccagtggagta
tctcaaaggatacatctccacgagaatgatatatcagcttatggaggaacacagctctca
aatgctctccattcaggcactccacaacaaaacagtccctggacaatagagtttctaaac
aaaatcaaggaaaagagcaggttgcgccagcagtcctttccacgggacttatctagccca
atattggggtattcaggcaatgcgccaaaagttaataagagaagaagtccatccattctt
gaatttttcaagtatgaaggtggtaacactccgagaaagttaccagaacggaaaagacaa
aagcgaccagtacaacgctcatccaagattgaaaagagttcagcatttcctcttactgga
tttacaccagctgataagagagcaagacagacactatcttttgcaacgaataagagtgga
agccaaactaagcttgtgtggagtgatggagctaatggtccgagcagaaagtttcagagt
cgtatataa
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