Rosa chinensis (China rose): 112172170
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Entry
112172170 CDS
T06020
Name
(RefSeq) uncharacterized protein LOC112172170 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112172170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112172170
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112172170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
112172170
NCBI-ProteinID:
XP_024165176
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Position
6:complement(1071707..1089413)
Genome browser
AA seq
1974 aa
AA seq
DB search
MATDVDASLWWDPFSLLLTDLENAPLSDDLPPNLVKKLKANHAWFVDTVFLFKPPSEKSK
AALDSQLVKIGSHQLDIKPELKDKALTISSYLCLDEVQSYILVERSLKDNNVALDSVAHE
YVHAVLIHYYIERQCLLKCTRSILMLALSLETFSGEGTAIKEEALKLISDGLEKKLISVL
QDLLSSNPPEQMDVDLFSLWAEETLIEDNLVLDILFLAYYESLCTCNGETWKGLCLLYKG
ILSGSSNFEKLAISTEALRSSYQAKVQLLLILIETLDLESCLQMVHDEMPFRHGASAITL
ADIQEIEAIISTLNAFETKEAGPLILAWAVFLCLISSLPGKEENNILMEIDHVGYVRQAF
EASSLTYFVEILESDVLKESDGPVAGYRSVLRTIISAFIASYEINLQMEEGTLMLILDIL
CKIYQGEESLCIQFWDRGSFIDGPIRCLLYNLESEFPFRTVELVRLLSSLCEGTWPAECV
YNFLDKSVGVSSLFKIANNSFRDGISQTVETDLPLHVPGLEGLVIPSKTCGHILRLVGEN
TALVRWEYTQSGVLVLLMRLAQELYFQRNEEVLLILNLLSRMVTFSMAVCFALMDIGSSL
HFQSTGMSGQNSMWVVEMISTLVRRLSPTPSGAALMSVAINILAKMLKCSPSHVAEVALK
ANMFDFEIGDNGSSSESWLLSGKLAKMLVIDCEHNDSDCALTISVLDFTLQFMESGVKND
AVLALIVFSLQYVLVNHEYWKYKLKHTRWRVTLKVLEVLKRCITSTSCSEKLDEVILDRI
FCDSSIHNTLFQIVCTTPQMLERLCFSRLIELTEIEGLQLAICSVLDVLFIMLSKFSKGT
FSSLPIFHQAVFSSATKPIPVVAALVSFISYSRNPRIQVGAARVLSVFLMMADIIQPYLF
GSSFGLDDIQIEDLRHGISYILLEQSVSNEDLFVAVVNLLTSAARYQPAFLVSVLSTKFN
EGVQLSNAGDMKLPTNEVLLRSSESEKASVVDAVLHYVRRSNDLINSNPRILLNVLNFLR
ALWQDAARYSGILECVKGSENFWKNLSSSISKISSVEAPLPENLTETEAQDFGYRYQCQS
SILEIMANDVFLQKKLLHAESLVKQVTESQDKIQNTVRTEKSKGEILEDILSAWCGSSVW
GNLTKSLSHSEYDTNLYLRAKVAASSVTALVMVKLARGDAGSLSVSLLEKSRILLNKLRS
HPAFSELLAQYSLHSYSSMLSFSSAEKERNYLILSDLYYHLQGKVEGREIGAGSFKELSQ
FLIESNIFQTYQLKYDGDLFITGKDAYRFDLKRVRADLGSDLWDYSTWKESKAIAETMLN
HMKDVNSMVFLTSSKLSALRALRSVLTVYLDDSLESKSTGREISDQLVFPCIDHICQNFL
DTVKSLAPELGASEEIFHFLAAQAELLLYLMISTHKSLPPSVCVLVLKTSAAGLKVLSDF
QPLVTGSSVSVVSSTVKLLLMLLLSAVKFSCHYSNLVGERDTVSVENMAKISNLSLRLLP
ILCNRIASAEDCRLSLTTMDLILRNFLTPNTWFPIIQNHLQLQHFILKLQDKKSLESVPI
IMKFFLTLARVRQGAEMLINHGFLSSLRFLFAEYLDDMSSSVTMSNRLSNSSDIMEKPKQ
IWGLGSAVITAMVQSLGDSSACSDVVENVIPYFFSEKAYMISYYLSAPDFPSDDHDKKRP
RAQQRQTSLTDLKETEHTLMLMCVLAKHWNSWVKAMKELDSQLREKSIHLLAFISRGTQR
LGETSSFSAPLICPPTLKEEFDTCKKPSFVNSRSGWFALSPPGCMSKPKVSAASITSTAL
TIKTQATANGYHVSQSYFSDTIALQIYKITFLLLKFLCLQAECASRRSEEVGFVDLDHFP
ELPMPEILHGLQDQAIAIITELCEANRMKEIHIEVQSICCLLLQIMEMAMYLELCVLQIC
GIRPVLGRVEDFSKEVKLLIKATETHAFLKPSLKSLKQIMSVVYPGLVQADEFL
NT seq
5925 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacgtcgacgcctctctctggtgggaccccttctctctcttactcaccgac
ctcgagaacgctcctctctccgacgacctccctcccaatctggtcaagaaattgaaggcc
aatcacgcctggttcgtcgacacagtcttcctcttcaagccgcccagtgagaaatcaaag
gcggctttggattcacagcttgtcaaaatcgggtcgcaccagctggatatcaagcctgaa
ttgaaagataaggctctgactatcagctcctatttgtgtctggatgaggtgcaatcttac
attcttgtcgaaaggtctctcaaggacaacaatgtagctcttgactctgtggcgcacgag
tatgttcatgcggtgttaattcactattatattgagcgacagtgcttgctgaagtgtacc
aggagtattctcatgcttgctttgtctctagaaactttctctggagaaggaactgctatt
aaggaggaagcactaaagttgatttctgatggattggagaagaaattaatatctgtgctg
caagaccttttatcttccaatccccctgaacaaatggatgttgaccttttcagcttgtgg
gctgaggagacactaatcgaagataatttggttttggatattcttttcctggcttattat
gagtcactttgtacttgtaatggtgaaacgtggaaaggattgtgcttgctgtataaggga
attttatctgggtcttctaactttgaaaagctggcaatatcaactgaagcactgcgttct
tcttaccaagccaaagttcagcttcttctaattcttatagaaaccctagacctggaaagt
tgtctccaaatggtccatgatgaaatgcctttcaggcacggtgcatctgctattactttg
gctgatatccaagagattgaagcaataatttcaactttaaatgcatttgaaacaaaagag
gcaggcccattaattctggcatgggcagtctttctttgtctgatttcatcacttccaggc
aaagaagaaaacaacatactaatggaaattgatcatgttggttatgttcgccaagcattc
gaggcgtcatctttgacttattttgtagaaatccttgaaagtgatgtattgaaggaatct
gatgggcctgttgctggttatcgaagtgtgttgagaactattatttctgcatttatcgca
tcttatgagatcaatcttcagatggaagaaggcactcttatgttaatactggatattctt
tgcaaaatttatcagggagaggagtcactttgtatccagttctgggaccgaggaagtttt
attgatggtcctatccggtgtcttctttacaacttagagagtgaatttcctttcaggact
gtggagcttgttcgccttttatcatccctttgtgagggaacgtggcctgctgaatgtgtg
tacaactttttagataagtctgttggtgtatcatccttgtttaagattgcgaacaattcc
tttagggatggcatctctcaaactgttgagacggacctcccgttgcatgtccctggactt
gaaggtttggtcatccccagtaaaacttgtgggcatatattaagattagttggtgaaaat
actgctcttgttcgatgggagtatacacaatccggggtgctagtgttgcttatgcgcttg
gcccaagagctgtatttccaaagaaatgaagaagttcttcttatcctcaacctccttagc
cggatggttacctttagcatggctgtatgctttgctttgatggatattgggagctctttg
catttccaatcaactggcatgagtgggcagaatagcatgtgggtggttgagatgattagc
actttggtcagaaggttatctcctactcctagcggtgctgctcttatgtccgtggctatc
aacattttggcaaagatgttaaaatgttccccttctcatgttgctgaggtagccttaaaa
gcaaatatgtttgatttcgagattggcgacaatggttcatcaagtgaatcatggttactt
tctggaaaactggcgaagatgcttgtaattgattgtgagcataatgatagtgactgcgca
ttgactatatcagtgctggactttactctgcagttcatggaatcaggtgtgaagaatgat
gctgtactggctttaatcgttttctctcttcagtatgttctcgttaaccatgagtactgg
aaatacaagttaaagcatactcgatggagagtaacattaaaggtgcttgaagtgttgaaa
aggtgtattacatcaacttcatgctctgaaaagctggatgaagtcatcctagataggata
ttctgtgattcttccatccataatactctctttcaaattgtttgtacaacaccacaaatg
ttagagagactatgtttcagccgtcttattgagctaacagagattgaaggtttacagctg
gctatatgttctgttctagatgttcttttcatcatgctctccaaattttctaagggtaca
ttttccagccttccaatttttcaccaagcagttttctcctcagcaacaaaaccaattcct
gtagttgcagcgctcgtatcgttcatatcttattctcgcaatccacgaatacaagttggt
gctgctagggttttgtcagtgttcttgatgatggcagatattatccaaccatatttgttt
ggaagcagctttggcctagatgacatacagattgaagatctgaggcatggtattagttac
atattacttgagcagtcagtatcgaatgaagatctctttgttgctgtagtcaatctgctc
acttctgctgcacgttatcagcctgcttttcttgtttctgtgttatccaccaaattcaat
gaaggtgtccaactgagtaatgctggtgatatgaagctgccaacaaatgaagttctgttg
aggtcatctgagtctgaaaaggcaagtgttgtggatgcagttctgcattatgttagaaga
tctaatgatcttatcaacagcaatccccgtatactgctgaatgttctgaactttctaaga
gctctgtggcaagacgctgctcggtactctggtattttggaatgcgtgaaaggctctgaa
aatttctggaaaaacttgtcgagttctatttccaaaatttctagcgtggaagctcctcta
cctgagaatttaactgagacagaagctcaagattttggatacagatatcagtgtcaatcc
tcgatattggaaataatggcgaatgatgtgttcctgcagaagaaactgttacatgccgag
tcacttgtaaaacaagtgactgaatcacaggacaagatacagaatacagtgagaactgaa
aaatcaaaaggagaaattctagaggatattttatcagcctggtgtggaagctcagtttgg
ggcaatttgaccaagtcactaagtcatagtgaatatgacaccaatctatatttgcgggca
aaggttgctgccagttcagtcaccgcccttgtcatggtgaaattagcacgtggtgatgct
ggaagtttgtctgtgtcattacttgagaagtcccgcattcttttaaataagctccgaagt
catcctgcgttttctgaattgttagctcaatactcactgcatagttacagttctatgtta
tctttctccagtgcagagaaggagcgaaattatttgatactcagcgatctatattatcat
ctgcaagggaaggtagaaggccgtgaaattggtgctggatcatttaaagaactctctcag
ttcttaattgaatcaaacatttttcagacttaccaacttaagtatgatggcgatcttttt
ataactggcaaagatgcgtaccggtttgatctcaaacgcgtaagagctgatttgggatca
gatctttgggattattcaacatggaaggagtcaaaggcgattgcagaaacaatgttgaat
cacatgaaggatgtgaactcaatggtgttccttacaagctcaaaactttctgcacttaga
gcattaagaagtgtcttaactgtttacctggatgattcactggagtcgaagagtacaggg
agagagatctctgatcaactggttttcccatgcatagatcacatatgccagaatttcctt
gatacagtaaaatcattggctccagaacttggtgcttctgaagaaatctttcacttcctt
gcagctcaagcagaattgcttctttatcttatgatttctacacataagagcctgcctcca
tctgtttgcgttcttgtgctaaaaacatcagctgctggccttaaagtgttgagtgatttc
caaccattagttactgggtcatcagtttctgtggttagctctacagtcaagctcttactc
atgctgcttctctcagcagtgaagtttagttgtcattattcaaatttagttggggaaaga
gatacagtatctgttgaaaacatggctaaaatatctaatctgagtctacgtctgctacca
attctctgtaaccgcattgctagtgctgaggattgcagactctcccttactactatggac
ttgatattgagaaatttcttgactcccaacacttggtttcccatcatacagaatcacctc
cagcttcagcattttattctgaagcttcaagataaaaagtctcttgaatctgtgcctatt
ataatgaagttctttttgactcttgctcgtgtgaggcagggtgcagagatgcttattaat
catggttttctctcatctctgagattcttgttcgctgagtacttggatgatatgtcttct
tcagtaactatgagtaataggctttccaactcatctgacataatggaaaaacctaaacaa
atttggggactgggttcggctgtcatcacagctatggttcagtctctaggagacagttct
gcttgttctgatgttgtggagaatgtaataccttacttcttttctgagaaagcatatatg
atttcgtactatctcagtgcaccggacttcccatctgatgatcatgacaagaaaagacct
cgtgctcagcagagacaaacctctcttactgatcttaaagaaactgagcacactctcatg
ctaatgtgtgtgctggcaaaacattggaattcatgggtaaaggccatgaaagaattggat
tcccagctgagagagaaaagtatccatcttttagcatttatcagcaggggaactcaacgc
cttggagaaacttcgagttttagtgcccctctcatatgtcctcctacccttaaagaggaa
ttcgatacttgcaagaaaccctcgtttgtcaacagtagaagtggatggtttgctctttca
ccgcctggctgcatgtcaaaaccaaaagtgtcggctgcctctatcacatcaacagcactg
actattaaaactcaagctactgcaaatggttatcacgtttctcaatcgtacttctcagac
actattgccctacagatctacaaaattacgtttctcctattgaagtttctctgtttacaa
gctgagtgcgcttctagaaggtcagaggaggtggggtttgttgatcttgaccattttcct
gagcttccaatgcctgagatcttacatggcttacaggatcaagcaattgccatcattaca
gaactatgtgaagctaacagaatgaaggagattcacattgaagtccagtctatctgttgt
ttgttgctacaaataatggagatggccatgtacttggaactttgtgttctacagatatgt
ggcataagacccgtgctagggcgtgtggaagatttttcgaaggaagttaaactgttgata
aaagcgacggagacgcatgctttcctgaaaccgtctctgaagtccttgaagcagataatg
tcggttgtctatcccggattggtacaggcagatgaatttttgtga
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