Rosa chinensis (China rose): 112172320
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Entry
112172320 CDS
T06020
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03020
RNA polymerase
rcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112172320
09124 Replication and repair
03420 Nucleotide excision repair
112172320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcn03021
]
112172320
03400 DNA repair and recombination proteins [BR:
rcn03400
]
112172320
Transcription machinery [BR:
rcn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112172320
DNA repair and recombination proteins [BR:
rcn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112172320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
112172320
NCBI-ProteinID:
XP_024165380
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All DBs
Position
6:11129720..11133321
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AA seq
318 aa
AA seq
DB search
MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS
VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV
TSKELLSSDHTVVPVDFSDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
PAATVTFMYEPDIRINEEMMDTLSLEEKTAWVDSSPTKVFELDPSTGKVLVVDPEAYTYD
DEVIKKAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVRLSED
TVEADDQFGELGAHMRGG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaaatcgtaccagaggttcccgcgggtgaaaatccgtgaaatgaggcacgac
tacctcaagttcgagctccgcgacaccgacgcgagcgtggccaacgcgctccggcgcgtg
atgatcgccgaggtccccaccgtcgccatcgacctcgtcgagatcgaaatcaactcctcc
gtcctcaacgacgagttcatcgcccaccgcctcggcctcatccccttgaccagcgaccgc
gccatgagcatgcgcttctcacgtgactgcgacgcctgcgacggcgacggccagtgcgag
tactgctccgtcgagtttcacctccgcgcccgctgccactccgaccaaaccctagatgtc
accagcaaggaactcctcagctccgaccacaccgtcgtccccgtcgatttctccgacgcc
tccggttacgaagcttccgaacagagaggaattatcattgtgaagttgcgaagggggcaa
gagctgaggctgagggctattgctagaaaggggattgggaaagatcatgcgaagtggtca
cctgcggctactgtcactttcatgtatgaacccgacattcgcatcaatgaggagatgatg
gatactttgtcactcgaggagaagacagcttgggttgatagcagtcctaccaaagtcttt
gagcttgatcctagtactggcaaggtcttggtggttgatcctgaagcatacacttatgat
gatgaagtgatcaagaaagcagaagctatggggaagcctgggcttgtggacatcactgcc
aaagaagatagttttatattcacagtggaatctactggtgcaattaaggcttctcagctg
ctgctcaatgccatagaaatcctgaaacagaaacttgatgctgtgcgcctttcagaggat
actgttgaagctgatgatcaatttggtgagttaggtgcacatatgcgaggaggatga
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