Rosa chinensis (China rose): 112172346
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Entry
112172346 CDS
T06020
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03013
Nucleocytoplasmic transport
rcn03015
mRNA surveillance pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112172346
09122 Translation
03013 Nucleocytoplasmic transport
112172346
03015 mRNA surveillance pathway
112172346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcn03019
]
112172346
03041 Spliceosome [BR:
rcn03041
]
112172346
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112172346
Messenger RNA biogenesis [BR:
rcn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112172346
Spliceosome [BR:
rcn03041
]
Complex C
Other components
EJC/TREX
112172346
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112172346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
112172346
NCBI-ProteinID:
XP_024165411
LinkDB
All DBs
Position
6:59608390..59613125
Genome browser
AA seq
426 aa
AA seq
DB search
MGETREDVYDEELVDYEEDDEKAPDSAAKVNGESAKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALILC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVTIKNHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSQVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacaagggaagatgtctacgacgaagagctcgtcgattacgaagaggatgac
gagaaggcccctgactccgcagctaaagtcaatggcgaatccgccaagaagggatatgtt
ggaattcacagctcaggattcagagatttcctcttgaagccggagcttctacgtgctatt
gtggactcgggatttgagcatccctctgaagtacaacatgaatgcatcccacaagctatt
ctgggaatggatgttatctgccaagctaaatctgggatggggaaaacggctgtatttgtc
ctatctactttgcagcagattgaccctgtcgcgggccaagtttctgcacttattctttgc
catactcgagaattagcttaccagatttgccatgagtttgagagattcagtacctacttg
ccagatcttaaggttgctgtcttctatggtggtgtcactatcaaaaatcacaaagattta
cttaaaaatgaatgcccccacattgttgttggaactcctggaagaatactagcacttgca
agagataaagacctctctttgaagaatgtgaggcattttatcctcgatgaatgtgacaag
atgcttgagtcacttgacatgaggagagatgtgcaagagattttcaagatgacgccccat
gataagcaagtaatgatgttctctgcaacactcagcaaagatatccgaccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgatgacgaagccaagttgactcttcat
ggtctagtacagcactacatcaagctaaccgaggcagagaaaaatcgcaagctgaatgat
ctccttgatgcactggacttcaaccaggttgtcatcttcgtcaaaagtgtgagcagagct
gcagagttgaacaagttactctcagagtgtaattttccctctatatgcatccattctgga
atgaaccaagaagaaaggttgaagcgctacaaaggattcaaggagggtcagaacaggatt
ctcgtggccaccgatttggttggtagaggaattgatattgaacgtgtcaatattgttatc
aattatgacatgccagactctgcggacacctacttgcacagggttggcagagctggtagg
tttggcaccaaagggctggcaattacatttgtatcatctgcttcggactctcaagtcctt
aatgatgttcaggagaggtttgaggttgacataaaggagcttcctgaacagattgatact
gccacatacatgccatcttga
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